Detail information of GWHGAAEX018193/evm.TU.scaffold_90.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-108 | FOG: PPR repeat |
| nr | gi|672126562|ref|XP_008786737.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Phoenix dactylifera] |
| Swissprot | tr|O82380|PP175_ARATH | 6.00E-109 | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Precursor) |
| trEMBL | tr|M5W238|M5W238_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ00840.1} |
| TAIR | AT2G29760 | 2.00E-108 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 2572388 | 2574172 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018193
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 172 | 218 | 2.10E-07 |
| PF01535.19 | PPR | 243 | 270 | 6.40E-05 |
| PF01535.19 | PPR | 276 | 302 | 0.00044 |
| PF01535.19 | PPR | 350 | 372 | 0.19 |
| PF13041.5 | PPR_2 | 375 | 423 | 1.70E-08 |
| PF01535.19 | PPR | 451 | 475 | 0.75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.520 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.290 |
| SRR5643514 | five period of Gastrodia elata | 4.750 | |
| SRR5643515 | five period of Gastrodia elata | 4.850 | |
| SRR5643524 | five period of Gastrodia elata | 3.760 | |
| SRR5643525 | five period of Gastrodia elata | 3.360 | |
| SRR5643528 | five period of Gastrodia elata | 2.400 | |
| SRR5643658 | five period of Gastrodia elata | 1.090 | |
| SRR5643659 | five period of Gastrodia elata | 5.760 | |
| SRR5643660 | five period of Gastrodia elata | 4.790 | |
| SRR5643661 | five period of Gastrodia elata | 6.750 | |
| SRR5643662 | five period of Gastrodia elata | 7.130 | |
| SRR5643663 | five period of Gastrodia elata | 5.190 | |
| SRR5643664 | five period of Gastrodia elata | 7.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.59 |
| Juven | Juvenile tuber | 6.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.84 | |
| Mother_Juven | Mother tuber of Juvenile | 1.82 |