Detail information of GWHGAAEX018199/evm.TU.scaffold_90.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|190570518|ref|YP_001974876.1|2.00E-123peptide chain release factor 1 [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
KOGKOG27260Mitochondrial polypeptide chain release factor
nrgi|695030810|ref|XP_009402889.1|0PREDICTED: peptide chain release factor 1-like, mitochondrial isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q8RX79|APG3_ARATH4.00E-79Peptide chain release factor APG3, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|B9RN56|B9RN56_RICCO0Peptide chain release factor, putative {ECO:0000313|EMBL:EEF47179.1}
TAIRAT2G470200Peptide chain release factor 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009727912962819779-
Transcript Sequence

Network for GWHGAAEX018199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03462.17PCRF762681.10E-58
PF00472.19RF-12763851.50E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity
GO:0016149Molecular Functiontranslation release factor activity, codon specific

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.820
SRR2545915Juvenile tuber11.110
SRP108465SRR5643513five period of Gastrodia elata8.300
SRR5643514five period of Gastrodia elata7.700
SRR5643515five period of Gastrodia elata7.060
SRR5643524five period of Gastrodia elata7.090
SRR5643525five period of Gastrodia elata11.770
SRR5643528five period of Gastrodia elata14.820
SRR5643658five period of Gastrodia elata11.830
SRR5643659five period of Gastrodia elata7.890
SRR5643660five period of Gastrodia elata8.290
SRR5643661five period of Gastrodia elata8.340
SRR5643662five period of Gastrodia elata7.630
SRR5643663five period of Gastrodia elata8.690
SRR5643664five period of Gastrodia elata7.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.980
SRR6049655Rhizomagastrodiae_C368-T10_good_17.090
SRR6049656Rhizomagastrodiae_C368-T07_good_18.330
SRR6049657Rhizomagastrodiae_C368-T07_good_110.150
SRR6049658Rhizomagastrodiae_C368-T04_good_110.020
SRR6049659Rhizomagastrodiae_C368-T04_good_112.180
SRR6049660Rhizomagastrodiae_C368-T01_good_110.000
SRR6049661Rhizomagastrodiae_C368-T04_good_19.430
SRR6049662Rhizomagastrodiae_C368-T01_good_110.860
SRR6049663Rhizomagastrodiae_C368-T01_good_110.550
SRR6049664Rhizomagastrodiae_C368-T10_good_18.830
SRR6049665Rhizomagastrodiae_C368-T10_good_18.830
SRP279888GastroGastrodia elata tuber 13.43
JuvenJuvenile tuber9.80
Mother_GastroMother tuber of Gastrodia elata 14.66
Mother_JuvenMother tuber of Juvenile 14.53