Gene detail

Detail information of GWHGAAEX018200/evm.TU.scaffold_90.90_evm.TU.scaffold_90.91

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	5.00E-172	FOG: PPR repeat
nr	gi\|672180318\|ref\|XP_008810347.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q9SQU6\|PP216_ARATH	1.00E-172	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic (Precursor)
trEMBL	tr\|A0A059DG06\|A0A059DG06_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW89180.1}
TAIR	AT3G06430	5.00E-172	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	2853967	2869161	-

Transcript Sequence
>GWHTAAEX018200 AGCTGCGCGGACGGAGGAATCGGGTTTTGCCGATCAACGAGAGGAGTGCTGCGATTATTAGGTTAGCGAACATTTTAGGTCATTGAGCTGACGTGACCTGCTGTGCCACGTCAGCTGCCCAGCTCATCAATAAAAATTAGGGGCACTGGAAGGGTGTACTGTAGCATCATCAAATTAACCTCAGCTTACTAAAGAAGAAATGAGGCAGACAAAAATGGAATTCTCGAGATGAACTGAAGTGGAACCGCACAGGAATGGCCGCTGCTTCTATCTCCTTCTCCTTCTGTTCACAGCCATTTCTTTCTAATGATGGCAAGAACCCAGTCCGCCGGCCTTCGAGGGTTTGTCTCTGTACCCTTCGCTCCTCATTCTCCCCCTCTGCTCCAGCAAAGCCTCCGTTGGAGAACGCGCCTTCTTTGCCGCCCAAGAAGCGGCCCTGGAAAGTGAGCGAGTTTCCGGATGCCTCTAAGGGCCCGGTTGAGGGGTTACATAGGCCGCGGACCGTGGCTGTTAAGAAGAAGACTCGGGTGGCCGCTAAGCCTTGGGCTCGCACGGTTGTGGAGGCTTTCTCCGATAGGATCCGAAAGAAGCAATGGGACCAGGCACTTGAGGTATTTGAGATGTTAAGAGCTCAAACATTCTATTACCCCAAAGAAAGAACATTTAGGAAACTCATAATCCTTCTCGGAAAATCAGGTCAAGCCAACCATGCGGGTGAACTTTTTGAGATCATGGTGGAAGAGGGTATCGAACCTACTTCATCATTGTACACCACTTTGCTTACAGCCTATTGCCGATGCAATATTATTGACAAAGCCTTCTCAATCCTTGCTAAAATGAAGACCTTACCTCTTTGCCAGCCTGAAGCCGACACATATTGCACCCTCTTGAAAGCTTGTGTTCGATCATCTAATTTTGAATTGATCGCTTCATTGTATCAGGACATGTCCGAACATATGATATCACCAGATACAATGACTCAGAATATTGTCCTTGAATGCTATGGGAAAGCCGGAAAATTCAATGAGATGGAGAAAGTTCTTACTTCTATGCTAGAGAGCGATGCATGCAGGCCAAATGCTTCAACCATAAGTATTGTTTTGCGTTTATTTGGTTCTAAGGGAGAAATAGATATGATGGGGAAATGGTATGAAACATTTTGCAATGCTGGAATTGATCTCAACACGCTGGCATGTAACTTTCTGATCAGTGCATATGGTAGGAAAAGGATGTACGATAAAATGGCTGCCATTATGGAATATATGCGTAAAACGGCATTATCATGGACCAGCTCAACTTATAACAGCATAATAGAATCTTTTGCTGTTGATGGTGATACCGTAAATATGGAGTATGCCTTCAATCAAATGCTAGCCGAGGGGATGAAACCTGGTACTACCACCTTTTGCTTCCTGATCACTGGCTATGCCAATGCAGGTCTCCTTAGTAAAGTTGCAAGTAGCATTAATCTGGCTGAGAGGTTTGAAATACCGCACAGTACCCGATTTTATAATGCAGTGATGTATGCTTGTTCAAAAGCTGGAGATCTAATGGAAATGGAAAGGGTGTTTAAGCTTATGAAGGTAAGAAATTATAAGCCAGATTCAGCTACGTATTCTATTATGGTGGAGACGTACAGGAGAGAAGGAATGAATGAAAAAATATATGATCTTGAAGCAAATGAAGGAAGGAGTTTTTCCCTTGAATTTGTTTCTTTATGAGATTAAAGAACTTGAAGATAACAAAACAGTTTTGCTCTTCCAAACATGGATTTTTATAGTATTTTTTTATACCTCTGAACAACTGGCCTTCTCTGAAGCTGCACTGTTTTCCCATATCTAATCAAGCACCTAATCATTTGAAGAGTCAAATGCAGTGTATTTAAATGCACCTTTCAAGATTTTCCCCGTGTAGCTAGCCATCTTCAAATTATGGTGTAGATGCTGAGCACAAAGTCTATTGCCAACATCAGGCATCTACAAAATGCAGGTAGTAAACCTTTTTGTCTATCTATAAAATAAAGGTGAACTTTTTCTTGACATCATAAATGTGAAGATCCTCAGGATGTTACATAAGGCATAACAAATTCATTAATGCCAAAATTTAATTAAATTTTAATTGTATATTGTATTGTGCAAATTAGTTCTTATGATGAAGATTTTGCTTAAATTTAATCGTTATGGTTCAC

Network for GWHGAAEX018200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17177.3	PPR_long	109	246	1.50E-10
PF13041.5	PPR_2	310	357	2.80E-07
PF13041.5	PPR_2	418	460	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.190
SRP064423	SRR2545915	Juvenile tuber	6.950
SRP108465	SRR5643513	five period of Gastrodia elata	1.600
	SRR5643514	five period of Gastrodia elata	2.180
	SRR5643515	five period of Gastrodia elata	1.790
	SRR5643524	five period of Gastrodia elata	1.420
	SRR5643525	five period of Gastrodia elata	3.000
	SRR5643528	five period of Gastrodia elata	2.300
	SRR5643658	five period of Gastrodia elata	1.700
	SRR5643659	five period of Gastrodia elata	4.060
	SRR5643660	five period of Gastrodia elata	3.810
	SRR5643661	five period of Gastrodia elata	4.560
	SRR5643662	five period of Gastrodia elata	4.150
	SRR5643663	five period of Gastrodia elata	3.500
	SRR5643664	five period of Gastrodia elata	4.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.050
SRP279888	Gastro	Gastrodia elata tuber	4.65
	Juven	Juvenile tuber	3.72
	Mother_Gastro	Mother tuber of Gastrodia elata	3.03
	Mother_Juven	Mother tuber of Juvenile	5.20