Detail information of GWHGAAEX018209/evm.TU.scaffold_90.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302389804|ref|YP_003825625.1| | 1.00E-157 | prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] |
| KOG | KOG4163 | 0 | Prolyl-tRNA synthetase |
| nr | gi|695017814|ref|XP_009395849.1| | 0 | PREDICTED: putative proline--tRNA ligase C19C7.06 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SMF6|M0SMF6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09390_001} |
| TAIR | AT3G62120 | 0 | Class II aaRS and biotin synthetases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 3119714 | 3145472 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018209
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00587.24 | tRNA-synt_2b | 172 | 337 | 1.70E-18 |
| PF03129.19 | HGTP_anticodon | 356 | 452 | 1.50E-19 |
| PF09180.10 | ProRS-C_1 | 479 | 552 | 1.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01881 | PARS, proS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006433 | Biological Process | prolyl-tRNA aminoacylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0004827 | Molecular Function | proline-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 199.740 |
| SRR2545915 | Juvenile tuber | 176.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 123.940 |
| SRR5643514 | five period of Gastrodia elata | 110.390 | |
| SRR5643515 | five period of Gastrodia elata | 109.550 | |
| SRR5643524 | five period of Gastrodia elata | 115.040 | |
| SRR5643525 | five period of Gastrodia elata | 57.570 | |
| SRR5643528 | five period of Gastrodia elata | 54.290 | |
| SRR5643658 | five period of Gastrodia elata | 54.460 | |
| SRR5643659 | five period of Gastrodia elata | 120.270 | |
| SRR5643660 | five period of Gastrodia elata | 125.520 | |
| SRR5643661 | five period of Gastrodia elata | 125.520 | |
| SRR5643662 | five period of Gastrodia elata | 99.790 | |
| SRR5643663 | five period of Gastrodia elata | 90.140 | |
| SRR5643664 | five period of Gastrodia elata | 98.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 132.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 149.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 134.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 139.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 146.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 162.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 159.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 145.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 142.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 159.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 144.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 144.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 168.25 |
| Juven | Juvenile tuber | 176.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 115.67 | |
| Mother_Juven | Mother tuber of Juvenile | 173.49 |