Detail information of GWHGAAEX018211/evm.TU.scaffold_90.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030079|ref|YP_003380010.1| | 6.00E-49 | beta-galactosidase [Kribbella flavida DSM 17836] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|672135690|ref|XP_008791517.1| | 0 | PREDICTED: beta-galactosidase 6 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q10NX8|BGAL6_ORYSJ | 0 | Beta-galactosidase 6 (Precursor) |
| trEMBL | tr|M0SQP6|M0SQP6_MUSAM | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT2G28470 | 0 | beta-galactosidase 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 3221620 | 3237683 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018211
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 47 | 353 | 1.70E-116 |
| PF02140.17 | Gal_Lectin | 786 | 863 | 5.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.550 |
| SRR2545915 | Juvenile tuber | 4.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.370 |
| SRR5643514 | five period of Gastrodia elata | 82.500 | |
| SRR5643515 | five period of Gastrodia elata | 44.800 | |
| SRR5643524 | five period of Gastrodia elata | 92.810 | |
| SRR5643525 | five period of Gastrodia elata | 127.800 | |
| SRR5643528 | five period of Gastrodia elata | 155.740 | |
| SRR5643658 | five period of Gastrodia elata | 143.170 | |
| SRR5643659 | five period of Gastrodia elata | 4.230 | |
| SRR5643660 | five period of Gastrodia elata | 5.990 | |
| SRR5643661 | five period of Gastrodia elata | 6.030 | |
| SRR5643662 | five period of Gastrodia elata | 3.140 | |
| SRR5643663 | five period of Gastrodia elata | 2.310 | |
| SRR5643664 | five period of Gastrodia elata | 3.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 76.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 65.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 65.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.62 |
| Juven | Juvenile tuber | 22.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.47 | |
| Mother_Juven | Mother tuber of Juvenile | 49.04 |