Detail information of GWHGAAEX018215/evm.TU.scaffold_90.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220931148|ref|YP_002508056.1| | 1.00E-26 | RNA methyltransferase [Halothermothrix orenii H 168] |
| KOG | KOG2187 | 0 | tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes |
| nr | gi|743780003|ref|XP_010920398.1| | 0 | PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8L7S3|C3H24_ARATH | 0 | Zinc finger CCCH domain-containing protein 24 |
| trEMBL | tr|J3LV57|J3LV57_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G10320.1} |
| TAIR | AT2G28450_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 3358621 | 3391596 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018215
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 100 | 128 | 1.20E-06 |
| PF13847.5 | Methyltransf_31 | 595 | 650 | 7.40E-08 |
| PF05958.10 | tRNA_U5-meth_tr | 751 | 805 | 1.00E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0008173 | Molecular Function | RNA methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 56.040 |
| SRR2545915 | Juvenile tuber | 57.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.050 |
| SRR5643514 | five period of Gastrodia elata | 33.580 | |
| SRR5643515 | five period of Gastrodia elata | 31.030 | |
| SRR5643524 | five period of Gastrodia elata | 35.130 | |
| SRR5643525 | five period of Gastrodia elata | 20.040 | |
| SRR5643528 | five period of Gastrodia elata | 19.240 | |
| SRR5643658 | five period of Gastrodia elata | 22.880 | |
| SRR5643659 | five period of Gastrodia elata | 31.920 | |
| SRR5643660 | five period of Gastrodia elata | 31.430 | |
| SRR5643661 | five period of Gastrodia elata | 32.200 | |
| SRR5643662 | five period of Gastrodia elata | 26.320 | |
| SRR5643663 | five period of Gastrodia elata | 27.230 | |
| SRR5643664 | five period of Gastrodia elata | 28.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 52.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.83 |
| Juven | Juvenile tuber | 41.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.72 | |
| Mother_Juven | Mother tuber of Juvenile | 24.94 |