Detail information of GWHGAAEX018222/evm.TU.scaffold_90.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189501825|ref|YP_001957542.1| | 2.00E-12 | hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672162726|ref|XP_008801187.1| | 0 | PREDICTED: U-box domain-containing protein 45-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C7G1|PUB45_ARATH | 0 | U-box domain-containing protein 45 |
| trEMBL | tr|F6HG65|F6HG65_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51258.1} |
| TAIR | AT1G27910 | 0 | plant U-box 45 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 3679375 | 3696859 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 283 | 352 | 1.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.310 |
| SRR2545915 | Juvenile tuber | 6.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.540 |
| SRR5643514 | five period of Gastrodia elata | 7.350 | |
| SRR5643515 | five period of Gastrodia elata | 7.330 | |
| SRR5643524 | five period of Gastrodia elata | 8.540 | |
| SRR5643525 | five period of Gastrodia elata | 12.520 | |
| SRR5643528 | five period of Gastrodia elata | 11.620 | |
| SRR5643658 | five period of Gastrodia elata | 9.620 | |
| SRR5643659 | five period of Gastrodia elata | 8.710 | |
| SRR5643660 | five period of Gastrodia elata | 9.680 | |
| SRR5643661 | five period of Gastrodia elata | 9.390 | |
| SRR5643662 | five period of Gastrodia elata | 12.340 | |
| SRR5643663 | five period of Gastrodia elata | 9.660 | |
| SRR5643664 | five period of Gastrodia elata | 11.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.54 |
| Juven | Juvenile tuber | 7.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.66 | |
| Mother_Juven | Mother tuber of Juvenile | 7.95 |