Detail information of GWHGAAEX018225/evm.TU.scaffold_90.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269123104|ref|YP_003305681.1| | 1.00E-36 | galactokinase [Streptobacillus moniliformis DSM 12112] |
| KOG | KOG0631 | 0 | Galactokinase |
| nr | gi|743768648|ref|XP_010914600.1| | 0 | PREDICTED: galactokinase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SEE5|GALK1_ARATH | 0 | Galactokinase |
| trEMBL | tr|M0RWQ2|M0RWQ2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P03440_001} |
| TAIR | AT3G06580 | 0 | Mevalonate/galactokinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 3910664 | 3976700 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018225
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10509.8 | GalKase_gal_bdg | 37 | 85 | 7.30E-23 |
| PF00288.25 | GHMP_kinases_N | 152 | 217 | 5.40E-14 |
| PF08544.12 | GHMP_kinases_C | 393 | 465 | 3.00E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006012 | Biological Process | galactose metabolic process |
| GO:0046835 | Biological Process | carbohydrate phosphorylation |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
| GO:0016301 | Molecular Function | kinase activity |
| GO:0004335 | Molecular Function | galactokinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005534 | Molecular Function | galactose binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.430 |
| SRR2545915 | Juvenile tuber | 8.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.840 |
| SRR5643514 | five period of Gastrodia elata | 30.070 | |
| SRR5643515 | five period of Gastrodia elata | 28.550 | |
| SRR5643524 | five period of Gastrodia elata | 29.220 | |
| SRR5643525 | five period of Gastrodia elata | 19.370 | |
| SRR5643528 | five period of Gastrodia elata | 22.830 | |
| SRR5643658 | five period of Gastrodia elata | 28.100 | |
| SRR5643659 | five period of Gastrodia elata | 19.300 | |
| SRR5643660 | five period of Gastrodia elata | 17.270 | |
| SRR5643661 | five period of Gastrodia elata | 19.040 | |
| SRR5643662 | five period of Gastrodia elata | 20.560 | |
| SRR5643663 | five period of Gastrodia elata | 19.220 | |
| SRR5643664 | five period of Gastrodia elata | 16.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.84 |
| Juven | Juvenile tuber | 23.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.50 | |
| Mother_Juven | Mother tuber of Juvenile | 16.15 |