Detail information of GWHGAAEX018226/evm.TU.scaffold_90.128
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383455075|ref|YP_005369064.1| | 1.00E-37 | polynucleotide Adenyltransferase [Corallococcus coralloides DSM 2259] |
| KOG | KOG2245 | 7.00E-172 | Poly(A) polymerase and related nucleotidyltransferases |
| nr | gi|672139141|ref|XP_008793349.1| | 0 | PREDICTED: poly(A) polymerase type 3 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q56XM9|PAPS3_ARATH | 3.00E-176 | Nuclear poly(A) polymerase 3 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|M0TUU4|M0TUU4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P29920_001} |
| TAIR | AT3G06560 | 7.00E-172 | poly(A) polymerase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 4015316 | 4030560 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018226
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04928.16 | PAP_central | 81 | 398 | 6.00E-51 |
| PF01909.22 | NTP_transf_2 | 140 | 194 | 1.90E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14376 | PAP | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0031123 | Biological Process | RNA 3'-end processing |
| GO:0043631 | Biological Process | RNA polyadenylation |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0004652 | Molecular Function | polynucleotide adenylyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.790 |
| SRR2545915 | Juvenile tuber | 18.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.830 |
| SRR5643514 | five period of Gastrodia elata | 16.760 | |
| SRR5643515 | five period of Gastrodia elata | 18.600 | |
| SRR5643524 | five period of Gastrodia elata | 16.550 | |
| SRR5643525 | five period of Gastrodia elata | 18.800 | |
| SRR5643528 | five period of Gastrodia elata | 18.510 | |
| SRR5643658 | five period of Gastrodia elata | 13.450 | |
| SRR5643659 | five period of Gastrodia elata | 16.890 | |
| SRR5643660 | five period of Gastrodia elata | 19.560 | |
| SRR5643661 | five period of Gastrodia elata | 19.450 | |
| SRR5643662 | five period of Gastrodia elata | 20.520 | |
| SRR5643663 | five period of Gastrodia elata | 15.210 | |
| SRR5643664 | five period of Gastrodia elata | 17.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.24 |
| Juven | Juvenile tuber | 13.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.96 | |
| Mother_Juven | Mother tuber of Juvenile | 30.26 |