Gene detail

Detail information of GWHGAAEX018228/evm.TU.scaffold_90.131

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|340616106\|ref\|YP_004734559.1\|	3.00E-21	long-chain-fatty-acid-CoA ligase [Zobellia galactanivorans]
KOG	KOG1256	4.00E-37	Long-chain acyl-CoA synthetases (AMP-forming)
nr	gi\|743783418\|ref\|XP_010921405.1\|	2.18E-47	PREDICTED: long chain acyl-CoA synthetase 1 isoform X3 [Elaeis guineensis]
Swissprot	tr\|O22898\|LACS1_ARATH	1.00E-37	Long chain acyl-CoA synthetase 1
trEMBL	tr\|M0TPD1\|M0TPD1_MUSAM	1.00E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P10780_001}
TAIR	AT2G47240	4.00E-37	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	4141090	4172373	-

Transcript Sequence
>GWHTAAEX018228 TCAGAGAGGCGAAAGCGAAGGCGGACCCCAGTGTTTTGTCTGACGAAGGCGAGCTTTGGGAGAATGAACGGGAAAAATTCTATCACTAGAGATATATTGGCATGCTATCTCGGCCGACATTCATATAACAATACCCAGTGATATTTTGGTGATTTTTGAGATGTCATTAATAAGATTGCATTGAACTAAATAGTTCCAATCTCACCAATATCTTTAAATAACATGGCAATACAAGAAGATGTCTGTGAACCAAATAACCCCTTAATACTTTCTTATAGTAGCATGGAATCTTTATCTTAATAAAATTTTTCATTGATCTTTTCTAAGAAATAAAGCTTTTACTCATATAAATTAGGTGACTTTCCAATGGGAAAAAAGGTAAATAAAAGACATTGTATAATGATTTCAATTTTCTGCAAAAAAAAAAAAAAAAGGAACATTAACCTTACTATTACTCAATTGGATACCTCCTTTGATATCATGGTTTTTAATCTCTCCTTTGATTAAACTAATTTCATTTTACCTAATTTATTAACAAAACACAAAAAAATGCTCCAAATCCCTCGTATCAACTCTTCCATGTATCAATGATTAGACATAATCTTAGAAGAGTCCAAGTTTGTTGAGAAATTATGTGTGTATTAATCTCACATTGCTTGTGGATAGAAATGTGAAGTGGTTTATACATATAGATGGGCTCAAGATCCAAAGGTTGATATTTTTCTCAAATATTAAATTTAAGTGTATTTGGCCATTTCCACCATTCTCTCTTATAAATGGTATCAAAGAGTTGGCTCATTTGGGTCAAGCGATTGCACTCAGTTATTTCTCTCACGTTGTCTTCCACGGAGTGCTTATGTTACTTACATTTGGTGCACCTGTAGGTGCTGATGGTGCAGCATTTGGTGAATTCACATAGTTTTGGCAACTTCCAATGCTTGAGTCGGTTCCAATTCAGAATATGATGTTTTATTTCCAGCTAAGAATTTGAATTATTGGAGGAGCCCACCTGTTGATACACACATGAGAGGAGATTGTTGAGAAATTGCAATATAGATTAGTCCCATATTTCTTGTGGATAGAAAGCTGAAGTGATCTTATTGCATGAATAGGCTCAAAACCAAAAGACTTGACTTCTTAGGTCAAATATTGAAATTAAATTGTGTGGACCATTTTCACAAATCTTCTCCCTTGCAAAATTTGTATTCATTTCAGGACTTACAGAAACTTGTGGTCAGACTACCGTTGGAGTCCCTAATGATCTCTCTTTTATCGGATCAGTCGGTGTGACAACTACATACACCGAATTGCGTCTTGAAGAAGTTCCTGAGATGGGCTACAATCCATTGTCTGAGCCTTCAAGAGGCGAAATTTGTATTAGGGGTAAAACTCTCTTCTCTGGATACTACAAAAACCCCGAGTTAACAAAAGAAGCAATCATAGATGGCTGGTTTCATACAGGTGATATTGGCGAGATTCGGCCTGATGGAGTATTGATAATCATTGATCGAAAGAAGAATATATTCAAGCTTTCTCAGGGGGAATATGTTGCAGCTGAATACTTGGAGAAAGTGTACAGATCTACTCCTATTATTGAAGACGCATTTGTGCGGGATACTGAGGGTCAGGTTTTGGCTGTAACAAGAGACGTTGTACAGGCCAGATCCCTACTCCAGGCAGAGATTCAGGCAGTGACTATTTTGAGGCAGGCACTCTCGGTTATGAAGGCTAACTTGGAGGGGCTCATTATTGAGGGAGATTGCTTGGGAGCTGTTCGGAGACTCCGACGTCTCTGGGAGAGGACCCTTCAGTCACGGGGCACTGACAGACATGCGGACCCCCTTTCTTTTCTGCTTGATATTCCCCATTTTATATTTGCTTATCGATCACATGGTACGAATCGTATAGCAGACTTTTGTGCTTTTTTGGCCAGCCAGGGTGTTTTTTCTTTTGATAGGGGTGCTTTGCTCCCCATGAGGCTTTTAGACCTCCTAGCTAAGGATACCATGGAGTTTGATCCTGGTTGA

Network for GWHGAAEX018228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	8	68	2.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.380
SRP064423	SRR2545915	Juvenile tuber	2.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.060
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.070
	SRR5643662	five period of Gastrodia elata	0.070
	SRR5643663	five period of Gastrodia elata	0.030
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.130
SRP279888	Gastro	Gastrodia elata tuber	3.38
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.36
	Mother_Juven	Mother tuber of Juvenile	0.00