Gene detail

Detail information of GWHGAAEX018229/evm.TU.scaffold_90.132

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256420160\|ref\|YP_003120813.1\|	3.00E-80	AMP-dependent synthetase and ligase [Chitinophaga pinensis DSM 2588]
KOG	KOG1256	0	Long-chain acyl-CoA synthetases (AMP-forming)
nr	gi\|672116039\|ref\|XP_008781171.1\|	0	PREDICTED: long chain acyl-CoA synthetase 1 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|O22898\|LACS1_ARATH	0	Long chain acyl-CoA synthetase 1
trEMBL	tr\|M0TPD1\|M0TPD1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P10780_001}
TAIR	AT2G47240	0	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	4186741	4209931	-

Transcript Sequence
>GWHTAAEX018229 CAATGTAATGAGATAATTATCAAATACTTTGTAAAGAAAAAGCTAAACCTTCAAGAAAATATAAAAAAAAAATCTCTCATAATTTCTTTCTTGAACATGAGAAATTATGTGCCACGTGTCATTTCTTATAAATGTTTTTTGGCACTCATATATTATATTAAATAGATACAACCAACCATCCACCTAACAAAATGCAGCGTATTGAAAGCAAAATAGAAGGAACTCGCCCAGACAAATTAACTGCTCATGGCTTCATAGTCTGTGCATTCCCTCCATAAATAAAGCTGCAATAAATATGGGGCAATCCTCCAACAATTATACTCCCTTTTTATTGCCTCATTCTCCTCTCCGATGCTCGTCTTACATCAGTGAGCTTTCGATATTTTTATTCTATAAGACGGAGAGATTGAGGGGAAGATGAACAGATATACAGTTCAAGTGGAGGAAGGGAGGATTGGGAAGAATGGACAGCCATCTGTCGGTCCAGTTTTCCGGAGTTCTCTTGCAAAGGATGGATTTCCACCGCTTGATCCCGGAATGAACACATCATGGCAAATTTTCAGGGCTTCCGTAGAAAAGCATCCCACAAATAAAATGCTTGGATGGCGGGAATTTAACCAAGGGAAGGCAGGACCTTATGTTTGGGAAACTTACAAAGAAGTTTATGAGAAAGTGCTTCATATTGGCTCAGCTTTAAGGCAGCTAGATTGTGCACCCGGTTCGCGAATTGGAATTTATGGAGGAAACTGCCCACAGTGGGCTATGGCAATGGAGGCTTGTAATGGATACAGCTTAATATGTGTGCCTCTCTATGATACACTGGGTGCAGGTGCTATTGATTACATAATAGATCATGCGGAAATTGATGTTGTATTTGTACATGATAAAAATATTAAGCAGATTCTTTCAGTCGATTGTAGGGCTGCAAGCAGATTGAAATGCATTATATCATTTAACACTATATCTGAGGAGCAGAATGACGCTGCTGCTGCACTTGGAATAAAAACATATTCATGGAATGATTTTGTTCTAATGGGAAAGAAATGTCCCTCAGATTATTACCCTCCTCAACCCTTAGACATATGCACCATAATGTACACTAGTGGAACTAGTGGTATTCCAAAGGGTGTTGTTTTAACACATGAAACACATGCAACATATATAAGAGGAATGGAACTTTTTCTGGATCAATTTGAAGACAAGATGTCAGTTGATGATGTTTACTTCTCTTTCCTACCCCTGGCTCATATCCTTGATCGCATGGTCGAAGAATACTTTTTTCACAAGGGTGCTTCTGTGGGGTACTATCAAGGGAATATTGAAGCTATAAGAGATGACATTATGGAATTAAAGCCAACATTCTTTGCCGGTGTCCCTCGAGTGTTTGAAAGAGTTCAGGAAGGAATATTACAAGCAGTGGCAGAGCTAAGGCCTCTAAGAAGGCTGATCTTCAACCTTCTTTACAAGCATAAATTACACTGGATGAGATTGGGATACACGCATAAAACTGCCTCTCCATTTGCGGATTTCTTAGCATTTAACAAGGTAAAAGCAAGGTTAGGAGGCTGTGTTCGCTTGATTGTATCTGGAGGTGCACCTTTGAGCCATGAAATCGAAGAATTCTTGAGAGTAACGAGTTGTGCATATATGGTGCAAGGATATGGACTTACAGAAACTTGTGGTCAGACTACCGTTGGAGTCCCTAATGATCTCTCTTTTATCGGATCAGTCGGTGTGACAACTACATACACCGAATTGCGTCTTGAAGAAGTTCCTGAGATGGGCTACAATCCATTGTCTGAGCCTTCAAGAGGCGAAATTTGTATTAGGGGTAAAACTCTCTTCTCTGGATACTACAAAAACCCCGAGTTAACAAAAGAAGCAATCATAGATGGCTGGTTTCATACAGGTGATATTGGCGAGATTCGGCCTGATGGAGTATTGATAATCATTGATCGAAAGAAGAATATATTCAAGCTTTCTCAGGGGGAATATGTTGCAGCTGAATACTTGGAGAAAGTGTACAGATCTACTCCTATTATTGAAGACATTTGGGTGTATGGAGATGGATTTCGCTCGAAGTTGGTGGCAGTGGTCACTCCGCATAAAGAAAATGCCAAGAAATGGGCATTGTTAAATGGCCCGAAGGGATCCTTGAATGAACTATGCGCATTGGAGGAACTTCATGATTATATATTCCAAGAGCTGAAGAAAACTGCAGAAAGAAATAAGCTAAGAGGCTTTGAGTATATCAAAGGGATTGTTGTCGATCCTCAGCCTTTTAATCTTGAAAGAGACCTTTTAACTGCTACAATGAAGAAGAAGAGATCTCAAATGCTGAAATACTACCAGGTTGATATCGAACGGGTCTATAATAGTCTGATAGAAGGAAAAAATTGAGTTCGATCTATCTACAAAAGATAGAAAAAGGTTTATCTTTTATATGCTTTATATATATATATATATATATGTGTATGATTACTCCTTTTGTAAAATAAAAGGATTAGCAGCTTTTGTTATGTAAATCACAGTATTATATAAATTTAATTGTTTTAATTAAAAGCCTCTGTGATCAAATGTTTTGAAGAATAGTATAAATATTTGTCAGTTCAGACGTTTCCATAGCATTAAGGTTAATATATATATGCT

Network for GWHGAAEX018229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	50	522	2.60E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.620
SRP064423	SRR2545915	Juvenile tuber	81.240
SRP108465	SRR5643513	five period of Gastrodia elata	9.720
	SRR5643514	five period of Gastrodia elata	5.790
	SRR5643515	five period of Gastrodia elata	13.560
	SRR5643524	five period of Gastrodia elata	5.280
	SRR5643525	five period of Gastrodia elata	20.450
	SRR5643528	five period of Gastrodia elata	30.540
	SRR5643658	five period of Gastrodia elata	37.950
	SRR5643659	five period of Gastrodia elata	77.420
	SRR5643660	five period of Gastrodia elata	123.340
	SRR5643661	five period of Gastrodia elata	102.030
	SRR5643662	five period of Gastrodia elata	145.700
	SRR5643663	five period of Gastrodia elata	117.010
	SRR5643664	five period of Gastrodia elata	156.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.990
SRP279888	Gastro	Gastrodia elata tuber	115.56
	Juven	Juvenile tuber	15.17
	Mother_Gastro	Mother tuber of Gastrodia elata	6.18
	Mother_Juven	Mother tuber of Juvenile	9.54