Detail information of GWHGAAEX018232/evm.TU.scaffold_91.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-12FOG: Predicted E3 ubiquitin ligase
nrgi|657393384|gb|KEH34204.1|1.44E-15zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|Q9ZU51|RHA2B_ARATH1.00E-12Probable E3 ubiquitin-protein ligase RHA2B
trEMBLtr|A0A072UXN5|A0A072UXN5_MEDTR5.00E-16Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH34206.1}
TAIRAT2G011506.00E-12RING-H2 finger protein 2B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000089522336523014-
Transcript Sequence

Network for GWHGAAEX018232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2741172.80E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.750
SRR2545915Juvenile tuber23.360
SRP108465SRR5643513five period of Gastrodia elata22.850
SRR5643514five period of Gastrodia elata7.280
SRR5643515five period of Gastrodia elata6.990
SRR5643524five period of Gastrodia elata3.640
SRR5643525five period of Gastrodia elata0.950
SRR5643528five period of Gastrodia elata0.930
SRR5643658five period of Gastrodia elata1.290
SRR5643659five period of Gastrodia elata0.620
SRR5643660five period of Gastrodia elata1.370
SRR5643661five period of Gastrodia elata0.420
SRR5643662five period of Gastrodia elata0.550
SRR5643663five period of Gastrodia elata0.100
SRR5643664five period of Gastrodia elata0.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_155.990
SRR6049655Rhizomagastrodiae_C368-T10_good_1148.540
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.910
SRR6049657Rhizomagastrodiae_C368-T07_good_1145.070
SRR6049658Rhizomagastrodiae_C368-T04_good_1197.190
SRR6049659Rhizomagastrodiae_C368-T04_good_1246.940
SRR6049660Rhizomagastrodiae_C368-T01_good_1191.960
SRR6049661Rhizomagastrodiae_C368-T04_good_1359.870
SRR6049662Rhizomagastrodiae_C368-T01_good_190.830
SRR6049663Rhizomagastrodiae_C368-T01_good_195.750
SRR6049664Rhizomagastrodiae_C368-T10_good_137.140
SRR6049665Rhizomagastrodiae_C368-T10_good_137.140
SRP279888GastroGastrodia elata tuber 2.40
JuvenJuvenile tuber118.96
Mother_GastroMother tuber of Gastrodia elata 6.16
Mother_JuvenMother tuber of Juvenile 14.97