Gene detail

Detail information of GWHGAAEX018237/evm.TU.scaffold_91.15

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695029555\|ref\|XP_009402205.1\|	0	PREDICTED: root phototropism protein 2 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q682S0\|RPT2_ARATH	4.00E-179	Root phototropism protein 2
trEMBL	tr\|M0T2U3\|M0T2U3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P29690_001}
TAIR	AT2G30510	2.00E-108	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000089	979030	981523	-

Transcript Sequence
>GWHTAAEX018237 CCCTACCACGTTATCTACAGCTTCACATGTAGCCCCTCCAAGTACGTGGGTCTCTTACCGCCATGTTTTCTGTCCACCGGCGAGAGCTCCTTTTCCTCCCCACAATCCCCTAGCCGAACCTCTCTCTCTCTTGGTAATATGGATTTGCCATATGCATTATAGCAGCCGTTTCGAGAGCTAAAACTTTAAATGCTTAAGCCCCCCCTGCTCATTGCAACTGGTCTGCGTCCGAAGTCCTACTGCCATGGAGCGCACTGCTCAGTGGTAATTCAAAGCATCGTATTGTTTCCGTTATATTTCATATTGCTAAAGAATCATAATATCGTTTCTTCATTTCTCCAAATTGCGACTAGGGTTTTTTCTCAGGAAGTCCCTTCTGACATCGTTATCAAGGTAGATGACGCCACTTTTCCTCTCCACAAGTTCATATTGGTAGCAAAAAGCGGGTATGTAAGAAAGAGGATTGTGGAGTCAGATAGATCGAATCTGGGAGTGCTGGAACTGAAGGGGATGCCAGGCGGTGCGGAGGCGTTTGACAAGGCGGCTAGATACTGCTATGGCATCAACTTCGAGATCTCAGTGCAGAACGTGGCGGCTCTGCGTTGTGCCGCTGAGTGGCTTGAGATGACTGAAAAGTATTGCCAGGGGAACCTCGCCGCCAGAGCAGAGGAGTTTTTTGCCAAGGCGGCGCTCAGCACTATTCCTGGCGCTGTTGCCGTGCTCAAGTCCAGCGAAACCCTTCTCCCTTTCGCTCATAACCTACGTATCGTGCAGCGCTGCGCAGATTCCATCGCCTCCAAGGCTTCTCACGAGCCAAACTGGTGGGCCGCCGATCTGGCACTGCTCAGCCCTCCCTTCTTCCTTGAAACACTGGACGCCATGAAAGCTCGAGGTGCCGCTCCAAAAGCGCTTTCAACCTCAATAACAATCTACGCTGGAAAATCCCTCACTGAACTGCTCCCACTTTCTGCCGCCAGCAACCGTTGTTCTATCCTACGCAGCTTCATCGAATCCCTTACTCGAATCCTCCCTTCAGATCGAGATGCTCCCCTCTCCGTAGCCTTCCTCTGCTGCCTCCTACGCGCTGCCATCCACCTCAAGTCCTCTGCCGAATCCCGTCACACTATTGAGCGTCGGATCGCTGCTTCCTTCGACCAGATCGTCATAGGCGACCTCATGACCGTTGCCTTTGATTACTCCGGTCATCGGCTTGCCGATCTTGACAGCATTCGCAGAATTCTTACGTGTTATGCAGAACGCCAAGTCGTTGGCGCCGCAGCGCAGCGAACAGCACGAATTGTTGACGCATTTGTCGCTCAAATCGCCACAGAGCAGGAGCTGCCGGTTTCCAAGTTCACCGGCATCGCTGCTGCACTTCCGAAATCGGCGCGTCGGTTTGACGACGATCTCTATCGCGCCGTCGACATTTACATCAAGGCGCATTCATGGCTAGATGAGATAGAGAGGGAGAAAGCGTGCAGTGTGATGGATCCATTAAGGCTTTCCTACGAGGCGCGGGTCCACGCGTCGCAGAACAAGCGGCTGCCTGTTCAAGTAATCCTCCACGGCCTTTACTACGACGAGCTAACTCTCCGGAGCGGCTGCTCCGCCGGCGAGCCATCGCTAACCGGCACCGACGCATTGGCGAAAGAGAACGAGGTTCTGCGGTCGGAGCTTGCTCGGATGAAGCTTCACTTGACGGAGATGCAGAGGAGTCATTGCAACACCTCTGGAAAGTCGCCTGCGCTCGCTAAGAAGCCAACCTTCTTTTCATCTGTGTCTAAGCGGTTGGGACAGCTTAATCCGTTCCGACAAGGTTCAAAGGATACTTCAAGTATTGAAGACAATGCTCGGGTGCTTTTGATGAAGCAGAAAAGAAGGAGGTTCTCCATCTCTTAAGCAATGACTGAATATATATGCATCAAAAAATGTGTTTTGATTCTACTAGTGTCTGCCATAATAATTGTATGTGGAGATGGATTCCTTCTGCTGCTTGTTGGATTTTGTCAAATTTTAGCCTTGATTTTTTGGATGGTGCTTTGATATTGTTCTCTGGGTTGAGTTGTCTTTCATTTTAA

Network for GWHGAAEX018237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	57	148	4.00E-08
PF03000.13	NPH3	210	442	6.50E-60

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.590
SRP064423	SRR2545915	Juvenile tuber	1.200
SRP108465	SRR5643513	five period of Gastrodia elata	2.380
	SRR5643514	five period of Gastrodia elata	4.030
	SRR5643515	five period of Gastrodia elata	2.110
	SRR5643524	five period of Gastrodia elata	2.950
	SRR5643525	five period of Gastrodia elata	33.580
	SRR5643528	five period of Gastrodia elata	46.080
	SRR5643658	five period of Gastrodia elata	36.860
	SRR5643659	five period of Gastrodia elata	15.140
	SRR5643660	five period of Gastrodia elata	6.860
	SRR5643661	five period of Gastrodia elata	7.670
	SRR5643662	five period of Gastrodia elata	1.880
	SRR5643663	five period of Gastrodia elata	17.650
	SRR5643664	five period of Gastrodia elata	3.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.520
SRP279888	Gastro	Gastrodia elata tuber	4.28
	Juven	Juvenile tuber	0.86
	Mother_Gastro	Mother tuber of Gastrodia elata	5.06
	Mother_Juven	Mother tuber of Juvenile	0.19