Detail information of GWHGAAEX018239/evm.TU.scaffold_91.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428203095|ref|YP_007081684.1|1.00E-06RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC 7327]
KOGKOG01067.00E-103Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
nrgi|661887514|emb|CDP08645.1|2.71E-128unnamed protein product [Coffea canephora]
Swissprottr|P92964|SRS31_ARATH2.00E-104Serine/arginine-rich splicing factor RS31
trEMBLtr|A0A068UJD0|A0A068UJD0_COFCA1.00E-128Coffea canephora
TAIRAT3G618607.00E-103RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008913864371401205+
Transcript Sequence

Network for GWHGAAEX018239

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_15642.30E-15
PF00076.21RRM_1961581.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12893SFRS4_5_6 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.170
SRR2545915Juvenile tuber46.590
SRP108465SRR5643513five period of Gastrodia elata43.850
SRR5643514five period of Gastrodia elata38.440
SRR5643515five period of Gastrodia elata50.220
SRR5643524five period of Gastrodia elata38.410
SRR5643525five period of Gastrodia elata48.680
SRR5643528five period of Gastrodia elata68.910
SRR5643658five period of Gastrodia elata47.230
SRR5643659five period of Gastrodia elata66.250
SRR5643660five period of Gastrodia elata62.790
SRR5643661five period of Gastrodia elata69.950
SRR5643662five period of Gastrodia elata68.120
SRR5643663five period of Gastrodia elata67.700
SRR5643664five period of Gastrodia elata68.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.230
SRR6049655Rhizomagastrodiae_C368-T10_good_136.130
SRR6049656Rhizomagastrodiae_C368-T07_good_135.930
SRR6049657Rhizomagastrodiae_C368-T07_good_137.030
SRR6049658Rhizomagastrodiae_C368-T04_good_143.170
SRR6049659Rhizomagastrodiae_C368-T04_good_141.430
SRR6049660Rhizomagastrodiae_C368-T01_good_137.280
SRR6049661Rhizomagastrodiae_C368-T04_good_136.300
SRR6049662Rhizomagastrodiae_C368-T01_good_141.920
SRR6049663Rhizomagastrodiae_C368-T01_good_139.820
SRR6049664Rhizomagastrodiae_C368-T10_good_140.060
SRR6049665Rhizomagastrodiae_C368-T10_good_140.060
SRP279888GastroGastrodia elata tuber 46.97
JuvenJuvenile tuber49.24
Mother_GastroMother tuber of Gastrodia elata 30.90
Mother_JuvenMother tuber of Juvenile 47.07