Detail information of GWHGAAEX018240/evm.TU.scaffold_91.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307596161|ref|YP_003902478.1|6.00E-16transcription termination factor Tfs [Vulcanisaeta distributa DSM 14429]
KOGKOG29062.00E-29RNA polymerase III subunit C11
nrgi|672173613|ref|XP_008806943.1|7.47E-55PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Phoenix dactylifera]
Swissprottr|Q8L5V0|RPB9B_ARATH6.00E-07DNA-directed RNA polymerases II, IV and V subunit 9B
trEMBLtr|M0STF8|M0STF8_MUSAM5.00E-54DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351}
TAIRAT4G079502.00E-29DNA-directed RNA polymerase, subunit M, archaeal

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008914874791509122+
Transcript Sequence

Network for GWHGAAEX018240

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01096.17TFIIS_C711112.50E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03019RPC11, POLR3K RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0042779Biological ProcesstRNA 3'-trailer cleavage
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.010
SRR2545915Juvenile tuber15.420
SRP108465SRR5643513five period of Gastrodia elata20.750
SRR5643514five period of Gastrodia elata24.490
SRR5643515five period of Gastrodia elata21.750
SRR5643524five period of Gastrodia elata21.480
SRR5643525five period of Gastrodia elata18.000
SRR5643528five period of Gastrodia elata22.790
SRR5643658five period of Gastrodia elata20.750
SRR5643659five period of Gastrodia elata18.600
SRR5643660five period of Gastrodia elata16.520
SRR5643661five period of Gastrodia elata18.200
SRR5643662five period of Gastrodia elata13.520
SRR5643663five period of Gastrodia elata16.470
SRR5643664five period of Gastrodia elata13.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.760
SRR6049655Rhizomagastrodiae_C368-T10_good_120.980
SRR6049656Rhizomagastrodiae_C368-T07_good_110.940
SRR6049657Rhizomagastrodiae_C368-T07_good_110.180
SRR6049658Rhizomagastrodiae_C368-T04_good_17.170
SRR6049659Rhizomagastrodiae_C368-T04_good_15.130
SRR6049660Rhizomagastrodiae_C368-T01_good_15.230
SRR6049661Rhizomagastrodiae_C368-T04_good_15.940
SRR6049662Rhizomagastrodiae_C368-T01_good_112.280
SRR6049663Rhizomagastrodiae_C368-T01_good_112.100
SRR6049664Rhizomagastrodiae_C368-T10_good_121.770
SRR6049665Rhizomagastrodiae_C368-T10_good_121.770
SRP279888GastroGastrodia elata tuber 9.98
JuvenJuvenile tuber13.50
Mother_GastroMother tuber of Gastrodia elata 15.73
Mother_JuvenMother tuber of Juvenile 11.44