Detail information of GWHGAAEX018244/evm.TU.scaffold_91.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3122 | 2.00E-58 | DNA-directed RNA polymerase III subunit |
| nr | gi|672160115|ref|XP_008799831.1| | 3.14E-91 | PREDICTED: uncharacterized protein LOC103714387 isoform X2 [Phoenix dactylifera] |
| trEMBL | tr|M0RUU9|M0RUU9_MUSAM | 8.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P23690_001} |
| TAIR | AT5G09380 | 2.00E-58 | RNA polymerase III RPC4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000089 | 2033992 | 2071498 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018244
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05132.13 | RNA_pol_Rpc4 | 482 | 564 | 5.40E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03026 | RPC4, POLR3D | RNA polymerase | map03020 |
| Cytosolic DNA-sensing pathway | map04623 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006383 | Biological Process | transcription from RNA polymerase III promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
| GO:0005666 | Cellular Component | DNA-directed RNA polymerase III complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.850 |
| SRR2545915 | Juvenile tuber | 24.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.180 |
| SRR5643514 | five period of Gastrodia elata | 17.840 | |
| SRR5643515 | five period of Gastrodia elata | 18.360 | |
| SRR5643524 | five period of Gastrodia elata | 18.810 | |
| SRR5643525 | five period of Gastrodia elata | 9.810 | |
| SRR5643528 | five period of Gastrodia elata | 12.490 | |
| SRR5643658 | five period of Gastrodia elata | 11.140 | |
| SRR5643659 | five period of Gastrodia elata | 18.700 | |
| SRR5643660 | five period of Gastrodia elata | 19.120 | |
| SRR5643661 | five period of Gastrodia elata | 13.680 | |
| SRR5643662 | five period of Gastrodia elata | 14.830 | |
| SRR5643663 | five period of Gastrodia elata | 17.220 | |
| SRR5643664 | five period of Gastrodia elata | 16.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.77 |
| Juven | Juvenile tuber | 42.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.37 | |
| Mother_Juven | Mother tuber of Juvenile | 34.54 |