Gene detail

Detail information of GWHGAAEX018245/evm.TU.scaffold_91.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46447560\|ref\|YP_008925.1\|	4.00E-28	hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1947	0	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|695045499\|ref\|XP_009410546.1\|	0	PREDICTED: F-box/LRR-repeat protein 3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8RWU5\|FBL3_ARATH	0	F-box/LRR-repeat protein 3
trEMBL	tr\|M0TJR5\|M0TJR5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P22290_001}
TAIR	AT5G01720	0	RNI-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000089	2469894	2477844	+

Transcript Sequence
>GWHTAAEX018245 GGGTATTCGTGTAATTTCGGCATCTCGTTGTCTCTCTGGCCTCATCATGTTGAAATCCCGAACTACGCCTGAGTTTCTGTTATCAGTTGCAAGCCCCACATCTTGTTCATCTTCTTCGTCCTCCATGCCTTTCGATAATACATTTTACTAATAAAAGGCGGAAGCAGCTTAATCTTCTGCATCTCCTCTCCTCCTGTCATCATCAAGTTCGTCATGAGACAGAGCAGCACCCTTAGCAAAAGAGCCTTCGCCTGCGAGGGTCTTGAAAGCCAGATTCTGGGCGTCGTCTTCACGAATCCTTCATGCGATCCTCGACCCTCGAAGAAGCACAGATCTTTTGAGGATCCCAAGCCCAGTGTATTTGACGCTCTTTCTGAGGAACTCCTCTTCCTGATTCTCGACCACCTTGATTCTAGTCCCTCCGACAAGAAATCCTTCTCCCTCGTCTGCAGATCCTTTTACTATGCCGAATCTCGTCATCGGAGAAATCTGCAACCGCTTCGCTCGGATCTGATTCCGGCAGTCCTCTCTCGCTACCTCTCCATTTGCCACCTCGATCTTTCTCTCTGCCCTCGTATCTCCGACAGCGTTCTCACCTCCATCTCCGCTGCAGTTGGGACCTCACTTGTCTCTATAGATTTGTCTAGGTCGAGATCGTTCACGCATTGTGGACTTGGCAGCTTGGCGGCCAGCTGCCTGTCGCTCGTGGAGATTAATCTGTCAAACAGGATTGATCTGAACGACGCCTCAGCAGCCGCCATTGGGCAGGCCAGGAATCTGGAGAGGCTGTGGCTGGCTAGGTGCAAGCTTGTAACGGACATGGGGATTGGCTGCATCGCTGTTGGTTGCAGGAAGCTGAGGTCCCTCAGTTTGAAATGGTGTTTAGGGTTGTCTGATTTGGGAATTGAGCTTGTGTCTGTGAAGTGCAGGGACCTCATAAATTTGGATCTCTCTTACACGATGGTCACACAGAAGTGCCTTCCAGCAATTGTAGACCTACCTTTTCTTGAGAAGCTATCATTTGTGGGTTGCCCATTCCTTGTCGACAATGGTCTTGCAACTTTGAAGCAGGGATGCAAGTCTCTAGAGGTGCTCGATTTGTCAAATTGTCAGCTTCTAAGTGATGTTGGCTTACCTTCCATTGTTAGTCGTGCTATCAACTTGCGTCAACTAATACTGGCATACTACTCACCTGTTACCCTCTCTTTGACTAGTAGCTTGCAAAAGCTTGCCCAATTAGAGACAATAAAGCTAGATGGCTGCCAGATTACCAGTTCCGGGCTGCTCGCCCTTGGAAGTTCTTGCATGTCTTTGAAAGAATTGAGCTTGAGCAAGTGCTCAGGTGTGACCGATGAATGCCTTTCCTTCGTTGTTAAAAAACACACGGGTTTAACTAAATTAGACATCACTTGCTGTCACAAGATAACTGACATCTCGATTGCTAGCATCACTGGCTCATGTGCATCTCTCACATCACTGAGGATGGAGTCATGTAATCTGGTATCCAAGCATGCATTTCATATGATTGGAGAACACTGTCCTCTATTGGAGGAGCTTGACCTTACTGACAATGATTTGGACAATCATGGACTAGAGGCAATCTCGAAGTGTCATAAACTTTCTATATTGAAGATTGGGCTATGTCTGAATGTTAATGATGAAGGCATTATTCAAGTTGGCAAGGGTTGCTCTACGCTCAAGGAGCTGGATTTGTACAGGTCGGTGGGAATTACTGACACCGGCATTATGGCGATAGGGAAAGGTTGCCCTATGCTACAAATGATAAACCTATCATATTGTTCTGAAATCACTGATGATTCATTGAGATCTCTATCAAAATGCTCAAAGTTGAAGACGCTGGAGCTTCGAGGATGCTCTCAGATTTCTAATTATGGCCTTGCTTCAATTGCACTGGGATGCAAAGAACTTATCAAGTTCGATATAAAAAAATGCTATCATATCAGTGATGCTGGCATAGTTCCTCTTGCCCATTTGTGCCGTCAACTGCGTCAAATAAACCTCTCTTACTCTTTAGTAACAGATGCTGGGCTTTTGGCTTTGGCAAACATCAGTTGCTTACAAAGCATGACCATATTACATCTGAGCAAGCTGACCACAGGCGGCTTGGCCGCCACACTACTGGCATGTGCTGGTTTAACAAAAGTAAAACTCCACATGTCATTTAAATCGTTGATCTCTCTGCAATTAATCAAGCACATGGAGGCGCGCGGTTGCATTTTACAATGGAGGGATAAACCCTTTCAGGCTGAAGTCGATGCCAATGAAGTTTGGAAACAGAAGTCCCAAGACTTGGTCGCGGTTGTGTAAACAACGATGTCTTGCCAGGATAAATCAATACATCACAAATGTAGTGAGAGCAAAAGGCTTTTTGTTGACCTTTTTTTTGAATCCTTAACTGATATTGATGATGTACTCTTGATTGTTTGCCCAAATATTGTTATGCAGTTTAGCATTTAATATTATGTATATAATTTAATTTAATTAGTATTAAATCGAAATTGACCTATGTTTAGCAGAACCTCTCCCAATGAAAAGAACTCTGTATTATGAATTTGCTTGAAGAGTTTGGGTTCATAAAAAGAACTCTCTCATT

Network for GWHGAAEX018245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.5	LRR_6	212	233	1
PF13516.5	LRR_6	288	307	0.092
PF13516.5	LRR_6	391	407	1.4
PF13516.5	LRR_6	441	464	0.0021
PF13516.5	LRR_6	492	514	0.71
PF13516.5	LRR_6	542	566	0.71
PF13516.5	LRR_6	595	617	0.98

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.990
SRP064423	SRR2545915	Juvenile tuber	16.980
SRP108465	SRR5643513	five period of Gastrodia elata	18.180
	SRR5643514	five period of Gastrodia elata	17.350
	SRR5643515	five period of Gastrodia elata	20.040
	SRR5643524	five period of Gastrodia elata	19.840
	SRR5643525	five period of Gastrodia elata	9.260
	SRR5643528	five period of Gastrodia elata	7.200
	SRR5643658	five period of Gastrodia elata	4.820
	SRR5643659	five period of Gastrodia elata	16.270
	SRR5643660	five period of Gastrodia elata	25.240
	SRR5643661	five period of Gastrodia elata	19.540
	SRR5643662	five period of Gastrodia elata	16.580
	SRR5643663	five period of Gastrodia elata	17.990
	SRR5643664	five period of Gastrodia elata	12.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.170
SRP279888	Gastro	Gastrodia elata tuber	24.42
	Juven	Juvenile tuber	19.29
	Mother_Gastro	Mother tuber of Gastrodia elata	30.49
	Mother_Juven	Mother tuber of Juvenile	24.50