Detail information of GWHGAAEX018248/evm.TU.scaffold_91.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336171450|ref|YP_004578588.1| | 1.00E-36 | multicopper oxidase type 3 [Lacinutrix sp. 5H-3-7-4] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|672160082|ref|XP_008799813.1| | 0 | PREDICTED: laccase-3 [Phoenix dactylifera] |
| Swissprot | tr|Q941X2|LAC3_ORYSJ | 0 | Laccase-3 (Precursor) |
| trEMBL | tr|I1NSX0|I1NSX0_ORYGL | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT5G05390 | 0 | laccase 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000089 | 2754030 | 2756967 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018248
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 39 | 153 | 9.80E-45 |
| PF00394.21 | Cu-oxidase | 165 | 315 | 6.60E-41 |
| PF07731.13 | Cu-oxidase_2 | 421 | 555 | 2.40E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.840 |
| SRR2545915 | Juvenile tuber | 72.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.350 |
| SRR5643514 | five period of Gastrodia elata | 11.210 | |
| SRR5643515 | five period of Gastrodia elata | 3.830 | |
| SRR5643524 | five period of Gastrodia elata | 5.720 | |
| SRR5643525 | five period of Gastrodia elata | 1.220 | |
| SRR5643528 | five period of Gastrodia elata | 0.280 | |
| SRR5643658 | five period of Gastrodia elata | 1.060 | |
| SRR5643659 | five period of Gastrodia elata | 1.570 | |
| SRR5643660 | five period of Gastrodia elata | 0.780 | |
| SRR5643661 | five period of Gastrodia elata | 0.720 | |
| SRR5643662 | five period of Gastrodia elata | 0.670 | |
| SRR5643663 | five period of Gastrodia elata | 0.220 | |
| SRR5643664 | five period of Gastrodia elata | 1.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.80 |
| Juven | Juvenile tuber | 0.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.22 | |
| Mother_Juven | Mother tuber of Juvenile | 1.20 |