Detail information of GWHGAAEX018256/evm.TU.scaffold_91.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3074 | 3.00E-100 | Transcriptional regulator of the PUR family, single-stranded-DNA-binding |
| nr | gi|743843628|ref|XP_010938121.1| | 4.28E-175 | PREDICTED: transcription factor Pur-alpha 1-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SKZ1|PUR_ARATH | 8.00E-140 | Transcription factor Pur-alpha 1 |
| trEMBL | tr|M0SKF4|M0SKF4_MUSAM | 6.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02370_001} |
| TAIR | AT2G32080 | 3.00E-100 | purin-rich alpha 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000089 | 3309537 | 3346924 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018256
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04845.12 | PurA | 9 | 139 | 1.20E-22 |
| PF04845.12 | PurA | 200 | 258 | 2.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0032422 | Molecular Function | purine-rich negative regulatory element binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 65.490 |
| SRR2545915 | Juvenile tuber | 67.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.940 |
| SRR5643514 | five period of Gastrodia elata | 36.220 | |
| SRR5643515 | five period of Gastrodia elata | 43.760 | |
| SRR5643524 | five period of Gastrodia elata | 39.430 | |
| SRR5643525 | five period of Gastrodia elata | 83.920 | |
| SRR5643528 | five period of Gastrodia elata | 72.890 | |
| SRR5643658 | five period of Gastrodia elata | 77.440 | |
| SRR5643659 | five period of Gastrodia elata | 92.060 | |
| SRR5643660 | five period of Gastrodia elata | 103.820 | |
| SRR5643661 | five period of Gastrodia elata | 96.030 | |
| SRR5643662 | five period of Gastrodia elata | 102.650 | |
| SRR5643663 | five period of Gastrodia elata | 92.220 | |
| SRR5643664 | five period of Gastrodia elata | 110.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 53.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 61.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 118.62 |
| Juven | Juvenile tuber | 86.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.26 | |
| Mother_Juven | Mother tuber of Juvenile | 50.40 |