Detail information of GWHGAAEX018262/evm.TU.scaffold_91.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21110Uncharacterized conserved protein, contains WD40 repeats
nrgi|743788969|ref|XP_010922804.1|0PREDICTED: autophagy-related protein 18c [Elaeis guineensis]
Swissprottr|Q0WPK3|AT18D_ARATH0Autophagy-related protein 18d
trEMBLtr|K7KUZ5|K7KUZ5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14550.4}
TAIRAT2G408100homolog of yeast autophagy 18C

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008940269884061605+
Transcript Sequence

Network for GWHGAAEX018262

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402272530.047
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.820
SRR2545915Juvenile tuber32.390
SRP108465SRR5643513five period of Gastrodia elata17.650
SRR5643514five period of Gastrodia elata14.790
SRR5643515five period of Gastrodia elata13.470
SRR5643524five period of Gastrodia elata16.400
SRR5643525five period of Gastrodia elata20.310
SRR5643528five period of Gastrodia elata17.570
SRR5643658five period of Gastrodia elata25.380
SRR5643659five period of Gastrodia elata15.270
SRR5643660five period of Gastrodia elata14.800
SRR5643661five period of Gastrodia elata13.010
SRR5643662five period of Gastrodia elata15.140
SRR5643663five period of Gastrodia elata15.830
SRR5643664five period of Gastrodia elata15.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.380
SRR6049655Rhizomagastrodiae_C368-T10_good_113.670
SRR6049656Rhizomagastrodiae_C368-T07_good_118.980
SRR6049657Rhizomagastrodiae_C368-T07_good_118.990
SRR6049658Rhizomagastrodiae_C368-T04_good_122.690
SRR6049659Rhizomagastrodiae_C368-T04_good_127.150
SRR6049660Rhizomagastrodiae_C368-T01_good_121.280
SRR6049661Rhizomagastrodiae_C368-T04_good_120.290
SRR6049662Rhizomagastrodiae_C368-T01_good_115.960
SRR6049663Rhizomagastrodiae_C368-T01_good_118.730
SRR6049664Rhizomagastrodiae_C368-T10_good_117.150
SRR6049665Rhizomagastrodiae_C368-T10_good_117.150
SRP279888GastroGastrodia elata tuber 27.81
JuvenJuvenile tuber22.00
Mother_GastroMother tuber of Gastrodia elata 31.96
Mother_JuvenMother tuber of Juvenile 23.18