Detail information of GWHGAAEX018263/evm.TU.scaffold_91.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294054537|ref|YP_003548195.1| | 6.00E-15 | chalcone and stilbene synthase domain-containing protein [Coraliomargarita akajimensis DSM 45221] |
| nr | gi|672165087|ref|XP_008802438.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 6-like [Phoenix dactylifera] |
| Swissprot | tr|Q9XF43|KCS6_ARATH | 0 | 3-ketoacyl-CoA synthase 6 |
| trEMBL | tr|A2XE10|A2XE10_ORYSI | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT1G68530 | 0 | 3-ketoacyl-CoA synthase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000089 | 4171685 | 4173299 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018263
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 81 | 369 | 5.70E-130 |
| PF08541.9 | ACP_syn_III_C | 385 | 466 | 7.00E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.240 |
| SRR2545915 | Juvenile tuber | 1.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.420 |
| SRR5643514 | five period of Gastrodia elata | 1.540 | |
| SRR5643515 | five period of Gastrodia elata | 1.590 | |
| SRR5643524 | five period of Gastrodia elata | 1.670 | |
| SRR5643525 | five period of Gastrodia elata | 4.270 | |
| SRR5643528 | five period of Gastrodia elata | 0.910 | |
| SRR5643658 | five period of Gastrodia elata | 7.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.950 | |
| SRR5643660 | five period of Gastrodia elata | 0.540 | |
| SRR5643661 | five period of Gastrodia elata | 1.190 | |
| SRR5643662 | five period of Gastrodia elata | 0.490 | |
| SRR5643663 | five period of Gastrodia elata | 0.480 | |
| SRR5643664 | five period of Gastrodia elata | 0.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.32 |
| Juven | Juvenile tuber | 0.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.01 | |
| Mother_Juven | Mother tuber of Juvenile | 6.86 |