Gene detail

Detail information of GWHGAAEX018265/evm.TU.scaffold_92.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	9.00E-13	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG4205	3.00E-144	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
nr	gi\|743883556\|ref\|XP_010909449.1\|	0	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Elaeis guineensis]
Swissprot	tr\|Q8W034\|RNP1_ARATH	9.00E-75	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|M0SB48\|M0SB48_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P02300_001}
TAIR	AT3G07810	3.00E-144	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	44231	60624	+

Transcript Sequence
>GWHTAAEX018265 CCCCCGCCCATCTTCTTCTTTACACAATTATCCCTCTCTCTCCCTCTCCCCCTCCCTTTATCTGCCTTCTTTATATACCGTTTCGCTGCACTGCTCTCATCGAAATTGATACGAGAGGAATAAAAACACTGGGAAGAATAACGCATATTGAATTCGACGTAAAATTCGAAGCGAGAAGAGCTTGAAGAATTCGATGCAAATCTTTTCTGATTTCCATATGCCGATTCTCAGATCTTAGCAAGAAAGCGAGCGAAGGGATAACCTCTCCCACGTCAGAAGGTGAACCTCTGATCTACCGGAAAGAGGATGGAGTTGGATATGGGGAAGCTTTTCATAGGTGGAATTTCTTGGGACACCAATGAAATCCGCCTCCGGGAGTATTTCAAGAACTTTGGGGAAGTTGTGGAAGCAGTTATAATGAAGGACAGGACAACTGGCCGTGCTCGGGGATTCGGATTTGTGGTCTTCGCCGACCCTGCTGTTGCTGAGAAAGTTGTCATGGAGAAACACCTGATCGATGGCAGGATGGTGGAAGCCAAAAAGGCTGTTCCCAGGGATGATCAGTATATACTGAATAGAAACAGCACTAGCATCCAAGGTTCTCCTTGTCCTTGCCGAACTAAGAAAATATTTGTGGGAGGACTTGCTTCTACTGTGACGGATGCAGACTTCAAAAAATACTTTGAGCACTTTGGAGCCGTCAATGATGTTGTTGTGATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTTGTTACTTTTGACTCGGAAGATGCTGTGGAGAAGGTGCTCCACAAAACCTTTCATGAGCTCAATGGAAAGATGGTGGAGGTGAAAATAGCTGTCCCCAAAGAGCTCTCGCCGGGGCTTAACATGAGGTCGCCAATCGGGGGATTAAACTATGGAATAAACAGGATGAATACCGTCTTTAATGAATACAATCCGGGGCACAATCCAAACTCTGGAAGCTTTAGCATGAGAATGGATGGTAGATTGGGGCCACTAGCAGGTGCAAAGCATGGGCTCCCTCCTTTCAGTCCTGGTTATGGGATCGGATTGAATTTTGAGCCCGGGATGAGCCCAACGTTTGGTGGAAGCTCAAACTTAAATGGTCTTGGGTATGGAAAGGCATTGAGCCCATATTATAATGGCAACTCTAGCAGATTTGGCAGTCCTATTGGCTCAGCATTTAACTCTGCAGCTCGAAGCCTCTTCGGCAATGGCGGTCTTAACTACGGCACCAACCCTGCAGGTTCTAACTCTTTTATGGCCTCCGGGAATGGGAACCTAGGCGGATTCACTAATAGTTGCTTGAACTGGGCTGGATCTTCCTCTCCTCTTTCAGCTAATGGAATGAGCGGTGGTGGCTTTGCTGGGAATCCAAGCTATGGAAACGTGGAGAGTAGCCTTGGCTTCATTGGTGGAGGTTTTGGGAGAGATAATGGCGCAGGCTTGGCTAATACTTCTTTTGCCACAGCAGCCAATGCTTACGAAGAGAACTACAATGATTCTTATGGTGGGGGTTCGACATTTGGTGGAGGTTCCATTTATGGGGACCCCACTTGGTTGTCACCGTCCTCCGATTTCGATGGTTCTAGCCCATTTGGTTACGGACTCGGATCGGCTGCTTCAGATGTCGCATCGAAGGGAAGTTCACTCAGTTTCATGGGTGGCTATACTGCTACAAATAGGCAGATGAATAGAGGTGTTGCTGCCTAGGAAGGTGTCATACTTTTGGTTTTCTGATCTAATATAATAATAATAGATTGAGAGAAAAGCTGGAGCATGACTTAGAGAAATGGTCAGTTAATTATTTTAGGCTAACCAGAGTTGGTTGGTTCCCTGAATTCAATTTCAGTTCCCGCACATATTAATAGGATTTTGTCTGGTGCTTGAGAGTTGAGAGTCCATCCCTTCAATTGAGTATGTAACATTTCCCCTTCCTTTTCTTATATTTTTATGGCAAACCAGATTGCAAAAATGTATTCACAAGAGGGCTTCATTTTATGCAAGAAACCATTTTTTCCGCATTAATAACGACGGAGCTGTGTATTTTCTGGCAAAGTGTCTGTCTGTATTGCCAGACCATTATTTATTATTTTTTGTTGGTTTTAAACGAAATTAGAAAAACCTTTCAGATTCATATGAAATGTGATATGATATTATTATACTTTGAGAATAAGAAAAATGCTACTATCTGTTCTGTTAAAGCACTTTATTCCTCATTTCTTGAAGGATTGATGCCTCTTGTTTCATCATCATACTTTGGTGTAAAATTCTTTTAGTATCTGAGGATTCACTA

Network for GWHGAAEX018265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	8	65	1.30E-14
PF00076.21	RRM_1	108	166	2.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.990
SRP064423	SRR2545915	Juvenile tuber	22.300
SRP108465	SRR5643513	five period of Gastrodia elata	46.290
	SRR5643514	five period of Gastrodia elata	61.110
	SRR5643515	five period of Gastrodia elata	58.100
	SRR5643524	five period of Gastrodia elata	53.550
	SRR5643525	five period of Gastrodia elata	84.100
	SRR5643528	five period of Gastrodia elata	92.600
	SRR5643658	five period of Gastrodia elata	72.880
	SRR5643659	five period of Gastrodia elata	44.610
	SRR5643660	five period of Gastrodia elata	42.570
	SRR5643661	five period of Gastrodia elata	38.800
	SRR5643662	five period of Gastrodia elata	45.470
	SRR5643663	five period of Gastrodia elata	48.920
	SRR5643664	five period of Gastrodia elata	35.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.170
SRP279888	Gastro	Gastrodia elata tuber	36.04
	Juven	Juvenile tuber	22.23
	Mother_Gastro	Mother tuber of Gastrodia elata	46.62
	Mother_Juven	Mother tuber of Juvenile	44.45