Gene detail

Detail information of GWHGAAEX018266/evm.TU.scaffold_92.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|156936796\|ref\|YP_001434592.1\|	8.00E-133	translation initiation factor IF-2 [Ignicoccus hospitalis KIN4/I]
KOG	KOG1144	0	Translation initiation factor 5B (eIF-5B)
nr	gi\|672112910\|ref\|XP_008808243.1\|	0	PREDICTED: eukaryotic translation initiation factor 5B-like [Phoenix dactylifera]
Swissprot	tr\|Q9XEK9\|IF2C_EUGGR	1.00E-30	Translation initiation factor IF-2, chloroplastic (Fragment)
trEMBL	tr\|W5A4W7\|W5A4W7_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_1BL_A906FBBA8.1}
TAIR	AT1G76810	0	eukaryotic translation initiation factor 2 (eIF-2) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	73584	99603	-

Transcript Sequence
>GWHTAAEX018266 ATGCCTATGGCCTTTTCCGGTAAGAAAAAATCTTCAAAATCTAAGAAAGAGAAAAGTTCCCAAGCTTCCGGTACTTTTGACTCCCTGAATGATGAGGGAGGCAATCAGGAAGATGAATACAATGAGAAATTAAATGCTGTTACACAGCAGAGTGGGAAGAAGGCATCTAAATCGAAGACAGAAAAGAATTATGCTTCCATGGCCTTTGACGTCCTTGGTGAAGAGGAAGATATCCGTAACGATGATGGGGAAGGTGAGCCACTCGCTGTGGCATTCACCGGCAAGAAGAAGCCTTCAAAATCCAAGAAAGAGAAAAATTCTAAGGTTTCTGGTACCTTTGACATTCTCACCGAGGAAAGAGACATTCGTGAAAATGATTACGACGAGAAACAAAGTATTGTTACTTCCATAGGTGAAAAGAAGCGATCTGAATCCAAGGTAGAAAAAAGTTACGCTTCCAGCGCCTTTGATGTTCTTGGTGAAGAGGAAGTTATCCATAATGATGACGGGGAAGGTGAGTCACTCGCTGGGGCATTTACCGGCAAGAAGAAGCCTTCAAAAATCAAGAAAGAGAAGAACCTTAAGGGTTCTAGTACCTTTGATACCCTCACCGTGGAGAGAGACAATCAGGAAGATGACTATGACAAGATAGAAAATGCTGTTACTTCGACAGTTGAGAAAAAGTTTTCTAAATCCAAGGTTGAGAAAAGTGATGCTTCCAGCACCTTTGATGTTCTCGGTGAAGAAGAAGATATTCATATTGATAATGTAGAAACTTTTCCACTTGCTACGGCATTCACCGGGAAGAAGAAGCCTTCAAAATCAAAGAAAGAGAAAAATTCCAAGGTTTCTAGTAACTTTGATGCCCTCACTGAGGGGAGGGACAATCATGAAGATGAGCATGATGAGAAAGAAAGTGTTATTACATCCTTAGGTGAAAAGAAGCTATATAAATCTAGGGTCGAAACAAGTTATGCTTCCAGCGCCTTTAATGTTCTTGGAGAAGAAGAAGATATCCATATTGATGACCGGGAAGGTGAGTCACTCGCCGTCACTTCCACAGGTAAGGAGAAGCCTTCAAAGTACAAGGAGAAAAAATTTCAAGCTTCTAGTGTTTTTGATGCCCTTGGTGATGAGAGAAACAACCCAGAAGATGAATACCATGAGAAGGCAAATGCAATTTCATTCCCAGGTAAGAAAAAGCCACCTAAATTTATGGCAGAAAAAGGCTCTGTTTTCAGTGCTTTTAATGCTTTTGGTGAAGAGGAAGACAACCAGGCTAACAATAGGGAAGCTGAGCCACTCACTGCAGCATTTTCAGGTAAGAAGAAACCTTCCAAAGCCAATAAAGGAAAAACTTCTAATTCCTTAGTTACTGTTGATGCCATTATTGGAGAGGAAGAAAGTGAAATTAAGTCTGAACTGCATTCTGAATTATCGAATATGGCTCTTAAGCTTGATTTCGATGAATTGAAATTAAGCAGCAAAGCTGATTCTGATGAGCCTTTTACTAGACAGCAACAGCTAAAAAAGAAGAAGAAGAAAGGGGGGAGGACTGCCCAGGAGGAGGAGGACTTGGATAAAATTCTTGCTGAGCTCGGGGAGGGATTACAGCCTTCAAGCTGTTCAGTTGTTCCCACTACTCCAGAAGGAGATCCTGTTGACAACAAACTAAAAGAAGTTGATGTAGATTCTAGCAGACAGGATGGTGCTCAAGAGGAACTTGCTTCCAAAAATAAACAACAGAAAAAGAAGAAGAAGAAAACTGGCAGAACTCTCCAGGAGGAGGAGGACTTGGAAAAGATTCTCGCTGAACTTGGGGATGGTGCACAACCTGATCCATTCACTTCTGCTCCGTCTTCTTATATTTCTAAAGAATCATTAAAATTTGAGTCCTTACATGCTAAGCCTTCTTTTGATGGTGTAGCTGATGAGAAAGAAGGAGAAGCAGAGGGGGTTGAATCAGCAGCTGCCAAAAAGAAAAAGAAGAAGAAGGAAAAGGAGAAGGAAAAGAAGGCAGCAGCAGCAGCTGCTACTGCCACTGTTGAGGAAGAGGTTAAGGAAGAGAAGAAGGATTTGACAAAGGTAAAGGCTGCGGACAAGAAATTGCCAAAGCATGTTAGAGAGATGCAGGAGGCTTTGGCACGTAGAAAAGAGGCTGAAGAGAAGAAGAAACGAGAGGAAGAGGAAAGGCTGCAAAAAGAGGAGGAGGAGAGAAAGAGGTTGGAAGAGATGGAGAGGCTTGCTGAGGAGGTAAAAAAGAGGAAAAAGGAAAGGGAAAAGGAGAAGTTGTTGAAGAAAAAGCAGGAGGGAAAAATCCTGACAGCCAAGCAAAAGGAGGAGCAAAAGAGGTTAGAGGCAATGAGGAGACAGTTTCTCAGTCAAAATGATAATTTGTCTGCTGATACTACTACTCGAGAGACTAAAAAAAGGCCGATATATCAGGCAAAGAAAGTCAAAACTCTGCAGGCAAAGGTTGGAGATGTCGAAAAGGCAGCAGAATCTCAGAATGAGATAGTTGATGTAGACACAGTTCAGCTTGATGAATATGAGGTGGTAGAGGATATCATACCTCAACATACAGAAGCACAGGATCAACCTGAAGATAAGCTGGAAAGTGAGTCTGTGATCATGGAAGAGGAAGAAGAAGAAGAAGACGAGTGGGATGCTAAAAGCTGGGATGATGTTGATGTAAAATTGCCTGGCATAAATCCTTTTTCTGAAGAGGATAAAGAAGACTTAAGTTCACCGACTGTTATTTCATTTCCAGCTGTTAATCCTGAAAGTATAGCAGCCCCTCCAAAATCTTTAGCTAAAAAAATAGTTATTCCTCAAGAATCTTCTAAGAAGGAAGTTGAAGTGAATGGTCATGAAATATCTGACAGTATTGCAAAGATGAAAAATAATGCTGAAACCAAGCAGGAAATAAACCATACTGAGGATCCAACAAAAAAAAATGGCAGTGACCTTCGTTCACCCATTTGCTGTATTCTTGGTCATGTGGATACTGGCAAGACCAAGCTACTGGACTACATCCGTTGTACTAACGTACAGGAGGGAGAAGCTGGAGGTATTACCCAACAGATTGGTGCAACTTATTTTCCCACTGAAAACATAAGGGAGAGAACCAAGGAGCTTAAGGCTGATGCGACATTGAGAGTTCCAGGATTGCTTATCATTGATACTCCTGGGCATGAATCATTTACTAATTTGCGTTCTAGAGGTTCAAGTTTGTGTGATATTGCTATTCTTGTTGTGGACATTATGCATGGACTTGAGCAACAAACCATTGAGTCCCTTAACCTACTTAAAAGTCGGAATACAGAATTCATTGTTGCTTTGAACAAGGTTGATCGACTGTATGGTTGGAAGAAATGTCCCAATGCTCCTATAAGGAAGGCTATGAACCAACAGTCAAATGATGTAAAATATGAATTCAACAAGAGACTTACGGTGATTATAACTCAGCTTAAGATGCAAGGCCTAAATACTGCTTTGTACTATAAAAACAGAGACTTGGGAGAGACATTTAACGTTGTACCAACAAGTGCTGTCAGTGGGGAAGGTATACCAGATCTACTTCTGCTGTTGGTGCAATGGGCACAGAAAACAATGGAAGATAAGCTTACATATGTTGATGAAGTTCAGTGTACTGTGCTGGAAGTCAAAGTGATTGAAGGATTAGGAACCACAGTAGATGTAGTGCTTGTTAATGGGACTCTTTTTGAAGGGGATCAAATTGTCGTTTGTGGCATGCAGGGGCCTATTGTGACCAGTATCAGAGCTTTAATGACTCCTCATCCTATGAAGGAACTTCGAGTAAAGGGATCATACATCCATCATAAACAGCTTAAAGCCGCACAAGGTGTGAAAATATCTGCTCAGGGCCTTGAACATGCTATTGCAGGAACACCCTTATATGCAGTAAGACCGGGTGATGACATTGAAACTATTAAGGAAGCTGTGATGCAAGACATGAACAAAGTTATGAGTCGGATTGACAAGAGTGGGGAGGGTGTATATGTTCAAGCCTCAACATTAGGTTCTCTTGAAGCATTGACTGAGTTCCTAAAGAGCCCAGCTGTTAATATTCCATTTTGTGACTTTAGCATAGGTCCGGTACACAAAAAGGATGTTATGAAGGCTAGTGTTATGCTTGAGAGGAAAAAAGAATACGCAACGATCTTAGCTTTTGATGTTAAAGTAATGCCAGAGGCTCGTGAGCTTGCGGAAGAGTCAGGCGTAAGGATTTTTGTGGCAGATATTATTTATCATCTATTTGATCAGTTCAAGGCATACATAGACAAGTTAAAGGAAGAGAAGAAAAAGGATAGTGCTGAGGATGCCGTATTTCCATGTGTTCTTAAGATAATGCCAAACTGTGTTTTCAACAAAAAGGATCCTATTGTTTTGGGGGTAAATGTTCTTGAAGGTATTGCCAAGATTGGAACCCCTATTTGCGTTCCTTCAAGAGACTTTATTGATATAGGAAGGATTGCATCTATTGAGATTAATCACAAACAAGTTGATGTGGCTACAAAAGATCAAAAGGTAGCTATAAAGATTGTTAGCAATAGTGCTGAAGAACAACAGAAAATGTTTGGCAGGCATTTTGAAATTGAAGATGAGCTTGTTAGTCACATCTCAAGAAGATCAATTGATGTGCTTAAGGAAAATTACAGGGATGATTTGTCCAATGATGAATGGAGGCTTGTAGTCAAATTGAAGAATGTCTTCAAGATACTTTGATCAACAGTATTTTGATGACAAGCCAAAGTGTTATTTCGGTTTGGGTCAGAGTCGGGTTGATGCCTTTTTGACACTACAAAGGTAGCAAACAACACAGATTAAATCGCTGAAGATCAAAGCATGTAGCCGTTGCTTGTTTCCTATTCATCGTGGATTTTGTTTCCCCTTTTATATTATTTATTGTTATTTTTGTTCTTATTTATATTTTACTTGGTGCCTGATATGTTTCAGGTGTTCAATTTTCGCATGATTATAATTTTTATGGAATGCATTTTAATTTTCTTTACGTTACAATAATTTGTATATGCAAAATTAGACTTTTCAGAAAAAATGTATGAATATTTACCTGTTTTATCAATTTGCAATGGAGA

Network for GWHGAAEX018266

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	994	1202	4.50E-34
PF03144.24	GTP_EFTU_D2	1229	1307	9.20E-09
PF11987.7	IF-2	1328	1431	1.20E-21

Protein Sequence

>GWHPAAEX018266
MPMAFSGKKKSSKSKKEKSSQASGTFDSLNDEGGNQEDEYNEKLNAVTQQSGKKASKSKTEKNYASMAFDVLGEEEDIRNDDGEGEPLAVAFTGKKKPSKSKKEKNSKVSGTFDILTEERDIRENDYDEKQSIVTSIGEKKRSESKVEKSYASSAFDVLGEEEVIHNDDGEGESLAGAFTGKKKPSKIKKEKNLKGSSTFDTLTVERDNQEDDYDKIENAVTSTVEKKFSKSKVEKSDASSTFDVLGEEEDIHIDNVETFPLATAFTGKKKPSKSKKEKNSKVSSNFDALTEGRDNHEDEHDEKESVITSLGEKKLYKSRVETSYASSAFNVLGEEEDIHIDDREGESLAVTSTGKEKPSKYKEKKFQASSVFDALGDERNNPEDEYHEKANAISFPGKKKPPKFMAEKGSVFSAFNAFGEEEDNQANNREAEPLTAAFSGKKKPSKANKGKTSNSLVTVDAIIGEEESEIKSELHSELSNMALKLDFDELKLSSKADSDEPFTRQQQLKKKKKKGGRTAQEEEDLDKILAELGEGLQPSSCSVVPTTPEGDPVDNKLKEVDVDSSRQDGAQEELASKNKQQKKKKKKTGRTLQEEEDLEKILAELGDGAQPDPFTSAPSSYISKESLKFESLHAKPSFDGVADEKEGEAEGVESAAAKKKKKKKEKEKEKKAAAAAATATVEEEVKEEKKDLTKVKAADKKLPKHVREMQEALARRKEAEEKKKREEEERLQKEEEERKRLEEMERLAEEVKKRKKEREKEKLLKKKQEGKILTAKQKEEQKRLEAMRRQFLSQNDNLSADTTTRETKKRPIYQAKKVKTLQAKVGDVEKAAESQNEIVDVDTVQLDEYEVVEDIIPQHTEAQDQPEDKLESESVIMEEEEEEEDEWDAKSWDDVDVKLPGINPFSEEDKEDLSSPTVISFPAVNPESIAAPPKSLAKKIVIPQESSKKEVEVNGHEISDSIAKMKNNAETKQEINHTEDPTKKNGSDLRSPICCILGHVDTGKTKLLDYIRCTNVQEGEAGGITQQIGATYFPTENIRERTKELKADATLRVPGLLIIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTIESLNLLKSRNTEFIVALNKVDRLYGWKKCPNAPIRKAMNQQSNDVKYEFNKRLTVIITQLKMQGLNTALYYKNRDLGETFNVVPTSAVSGEGIPDLLLLLVQWAQKTMEDKLTYVDEVQCTVLEVKVIEGLGTTVDVVLVNGTLFEGDQIVVCGMQGPIVTSIRALMTPHPMKELRVKGSYIHHKQLKAAQGVKISAQGLEHAIAGTPLYAVRPGDDIETIKEAVMQDMNKVMSRIDKSGEGVYVQASTLGSLEALTEFLKSPAVNIPFCDFSIGPVHKKDVMKASVMLERKKEYATILAFDVKVMPEARELAEESGVRIFVADIIYHLFDQFKAYIDKLKEEKKKDSAEDAVFPCVLKIMPNCVFNKKDPIVLGVNVLEGIAKIGTPICVPSRDFIDIGRIASIEINHKQVDVATKDQKVAIKIVSNSAEEQQKMFGRHFEIEDELVSHISRRSIDVLKENYRDDLSNDEWRLVVKLKNVFKIL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03243	EIF5B	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	95.490
SRP064423	SRR2545915	Juvenile tuber	103.150
SRP108465	SRR5643513	five period of Gastrodia elata	67.490
	SRR5643514	five period of Gastrodia elata	62.690
	SRR5643515	five period of Gastrodia elata	57.800
	SRR5643524	five period of Gastrodia elata	60.250
	SRR5643525	five period of Gastrodia elata	58.040
	SRR5643528	five period of Gastrodia elata	56.010
	SRR5643658	five period of Gastrodia elata	47.740
	SRR5643659	five period of Gastrodia elata	77.510
	SRR5643660	five period of Gastrodia elata	75.030
	SRR5643661	five period of Gastrodia elata	72.580
	SRR5643662	five period of Gastrodia elata	69.820
	SRR5643663	five period of Gastrodia elata	70.810
	SRR5643664	five period of Gastrodia elata	78.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	69.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	74.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	72.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	85.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	76.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	68.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.910
SRP279888	Gastro	Gastrodia elata tuber	50.55
	Juven	Juvenile tuber	92.33
	Mother_Gastro	Mother tuber of Gastrodia elata	33.88
	Mother_Juven	Mother tuber of Juvenile	60.58