Detail information of GWHGAAEX018267/evm.TU.scaffold_92.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332796548|ref|YP_004458048.1| | 2.00E-53 | 30S ribosomal protein S5 [Acidianus hospitalis W1] |
| KOG | KOG0877 | 1.00E-138 | 40S ribosomal protein S2/30S ribosomal protein S5 |
| nr | gi|743870723|ref|XP_010906118.1| | 7.21E-151 | PREDICTED: 40S ribosomal protein S2-2-like [Elaeis guineensis] |
| Swissprot | tr|Q9SCM3|RS24_ARATH | 4.00E-139 | 40S ribosomal protein S2-4 |
| trEMBL | tr|W1NZP3|W1NZP3_AMBTC | 5.00E-150 | Uncharacterized protein {ECO:0000313|EMBL:ERN01148.1} |
| TAIR | AT3G57490 | 1.00E-138 | Ribosomal protein S5 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 247327 | 250188 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00333.19 | Ribosomal_S5 | 88 | 152 | 2.80E-31 |
| PF03719.14 | Ribosomal_S5_C | 171 | 242 | 2.30E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02981 | RP-S2e, RPS2 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.540 |
| SRR2545915 | Juvenile tuber | 2.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.830 |
| SRR5643514 | five period of Gastrodia elata | 35.900 | |
| SRR5643515 | five period of Gastrodia elata | 30.170 | |
| SRR5643524 | five period of Gastrodia elata | 32.680 | |
| SRR5643525 | five period of Gastrodia elata | 23.060 | |
| SRR5643528 | five period of Gastrodia elata | 18.360 | |
| SRR5643658 | five period of Gastrodia elata | 13.330 | |
| SRR5643659 | five period of Gastrodia elata | 31.420 | |
| SRR5643660 | five period of Gastrodia elata | 33.870 | |
| SRR5643661 | five period of Gastrodia elata | 38.600 | |
| SRR5643662 | five period of Gastrodia elata | 27.230 | |
| SRR5643663 | five period of Gastrodia elata | 22.860 | |
| SRR5643664 | five period of Gastrodia elata | 27.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 100.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 51.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 51.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.43 |
| Juven | Juvenile tuber | 75.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.01 | |
| Mother_Juven | Mother tuber of Juvenile | 53.34 |