Detail information of GWHGAAEX018269/evm.TU.scaffold_92.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332796548|ref|YP_004458048.1| | 2.00E-53 | 30S ribosomal protein S5 [Acidianus hospitalis W1] |
| KOG | KOG0877 | 9.00E-139 | 40S ribosomal protein S2/30S ribosomal protein S5 |
| nr | gi|743870723|ref|XP_010906118.1| | 4.62E-151 | PREDICTED: 40S ribosomal protein S2-2-like [Elaeis guineensis] |
| Swissprot | tr|Q9SCM3|RS24_ARATH | 3.00E-139 | 40S ribosomal protein S2-4 |
| trEMBL | tr|W1NZP3|W1NZP3_AMBTC | 5.00E-150 | Uncharacterized protein {ECO:0000313|EMBL:ERN01148.1} |
| TAIR | AT3G57490 | 9.00E-139 | Ribosomal protein S5 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 296634 | 299477 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018269
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00333.19 | Ribosomal_S5 | 85 | 149 | 2.70E-31 |
| PF03719.14 | Ribosomal_S5_C | 168 | 239 | 2.20E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02981 | RP-S2e, RPS2 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.930 |
| SRR2545915 | Juvenile tuber | 1.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.400 |
| SRR5643514 | five period of Gastrodia elata | 7.020 | |
| SRR5643515 | five period of Gastrodia elata | 9.370 | |
| SRR5643524 | five period of Gastrodia elata | 4.900 | |
| SRR5643525 | five period of Gastrodia elata | 2.350 | |
| SRR5643528 | five period of Gastrodia elata | 4.320 | |
| SRR5643658 | five period of Gastrodia elata | 4.450 | |
| SRR5643659 | five period of Gastrodia elata | 8.270 | |
| SRR5643660 | five period of Gastrodia elata | 4.880 | |
| SRR5643661 | five period of Gastrodia elata | 10.670 | |
| SRR5643662 | five period of Gastrodia elata | 3.340 | |
| SRR5643663 | five period of Gastrodia elata | 4.960 | |
| SRR5643664 | five period of Gastrodia elata | 6.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.74 |
| Juven | Juvenile tuber | 13.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.96 | |
| Mother_Juven | Mother tuber of Juvenile | 12.76 |