Gene detail

Detail information of GWHGAAEX018270/evm.TU.scaffold_92.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17231249\|ref\|NP_487797.1\|	5.00E-16	cellulose synthase catalytic subunit [Nostoc sp. PCC 7120]
nr	gi\|66269690\|gb\|AAY43222.1\|	0	cellulose synthase BoCesA5 [Bambusa oldhamii]
Swissprot	tr\|Q84ZN6\|CESA8_ORYSJ	0	Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
trEMBL	tr\|Q4U0Z5\|Q4U0Z5_BAMOL	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR	AT5G05170	0	Cellulose synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	302738	319532	-

Transcript Sequence
>GWHTAAEX018270 ATGGCGGTTGAAGGGGAGACGAGGGTAAAGATGCTTACTAAGAATGAGAACGGGCAAGTATGTCAAATCTGCGGGGATGGCGTTGGCAACACGGTGGAGGGAGATGTCTTTGTGGCTTGCGACGTATGCGGATTCCCAGTTTGTAGGCCGTGCTATGATTATGAGAGGAAGCACGGGGACCAGTGCTGTCCTCAATGCAAGACCAAGTATAAAAGACATAAAGGGAGCCCGCCTATCCATGGTGAGGAGGGCGATGAAGTGGATGCTGATGATGCAAGCGATTTTGACTATCCTTCCGGCAATCATGATCATAAGCAGAAAGCTGCTGACAAAGTTATTGGCTGGCATACGAACTATGAGAAAGGAGGAAATCATGGACTTCCAAAGTATGACAGTGGGGAGATCCCTCGGAGCCACTTCCCTTTGCTCACTCATAGTCGAAGCCAAGAGCTATCTGGGGAGCTTCCAGGGGCATCTCCAGATCATATGATGTCTCCGGGTAACATTGGCAAGCGCATGCATCCACTCCCATATGTAAATCATTCACCCAATCCCTCAAGGGAATTCTCTGGTGGATTTGGAAATGTTGCTTGGAAAGAGAGGGTTGATGGGTGGAAAATGAAGCAAGATAAAAATATACCTCCAATGGCTACAAATGTGACTAGCCATGCTCCATCTGAAGGGAGAGCTGTTACCGACATTGATGCTGCAACTGATTACAACATGGAAGATGCGTTATTTAATGATGAAACTAGGCAACCTCTGTCAAGGAAAGTTTCTATCCCATCTTCCAGGATAAATCCATACAGAATGGTCATTGCATTACGGCTTGTTATTCTATGTATTTTCTTGCACTACCGTATCACAAATCCAGTGCGTAATGCATATGCTTTGTGGTTACTGTCGGTCATATGTGAGATCTGGTTCGCAATATCATGGATATTGGATCAGTTTCCCAAGTGGTTTCCGGTAAACCGAGAAACATATCTTGATAGACTATCTATAAGGTATGACAGAGAAGGTGAACCGTCTCAGTTGGCTGCTGTGGACATATTTGTCAGTACTGTGGATCCTTCAAAGGAACCACCCCTAGTCACTGCCAATACCGTTTTGTCTATTCTTGCTGTGGATTACCCTGTTGACAAGGTATCCTGTTATGTTTCTGATGATGGAGCTGCTATGCTGACCTTTGAAGCCCTCTCTGAAACTTCAGAATTTGCAAGAAAATGGGTTCCATTTTGTAAGAAATACAACATTGAACCCCGAGCTCCAGAATGGTACTTTGCCCAGAAGATTGATTACCTGAAAGATAAGGTTCAACCTTCTTTTGTCAAAGATCGCCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTCCGTGTTAATGGTCTTGTGGCCAAAGCTCAGAAGGTTCCTGAAGAAGGATGGATCATGCAAGATGGCACACCTTGGCCAGGAAACAACACGAGAGATCATCCTGGAATGATTCAGGTTTTCTTAGGCCATAGTGGAGGGCTTGATAGTGAAGGCAATGAGCTACCACGATTGGTGTATGTTTCTCGTGAAAAACGCCCTGGTTTCCAACATCACAAGAAGGCCGGTGCTATGAATGCACTAGTGCGTGTGTCAGCAGTTCTTACCAATGGGTCTTATCTATTGAATCTTGACTGTGATCATTACATAAATAATAGCAAAGCATTAAGAGAAGCTATGTGCTTTCTCATGGATCCTAACCTTGGAAGATCTGTTTGTTATGTACAATTTCCACAAAGATTTGATGGCATTGATAGGAATGATCGTTATGCCAACCGCAATACTGTATTTTTTGACGTGAGTAGCATTCTTAATGTTTGTATCTCTGGTAAAGTGTATTATGGTACTGGTAGACGCACACATATATGTATATATATATATATATATGACTTTTTTGGGTTAAAGCCATACTTCCTCTCACCAACTAATCCTAAAAAAAGGAAAAAAATGCTCAACCACGATAATATCATTAAATCAATTTCATATTGCGCTGGGTTTGATGACGAGAAGTCACTTCTCATGTCACAAATGAGTTTGGAGAAAAGATTTGGCCTGTCGTCTGTTTTTGTTGCTTCTACTCTTATGGAGCATGGTGGTGTTCCACAGTCAGCAACGCCCGAATCTTTATTAAAAGAAGCTATCCATGTCATCAGCTGCGGCTACGAAGATAAATCCGAGTGGGGAAGTGAGATTGGTTGGATTTATGGATCTGTTACAGAAGATATTCTTACAGGATTCAAAATGCATGCTCGTGGATGGCGCTCAATTTATTGCATGCCCAAGCTACCTGCTTTCAAGGGTTCTGCACCTATCAACCTTTCAGACCGTCTTAATCAAGTCTTGCGATGGGCCCTTGGTTCTGTTGAGATTCTTTTTAGCCGGCATTGTCCTATATGGTATGGGTATGGCGGACGGCTCAAATTCCTCGAAAGATTCGCATACATCAACACAACTATTTATCCTCTCACTTCAATCCCGCTCCTCTTGTACTGCACTTTGCCTGCTGTCTGTTTGCTCACCGGAAAATTCATCATCCCTCAGATCAGCAACTTTGCAAGCATTTGGTTCATATCCCTCTTCATCTCCATCTTCGCCACAGGAATTTTGGAGATGAGATGGAGTGGCGTCGGCATCGATGAATGGTGGAGGAACGAGCAGTTTTGGGTTATCGGTGGCGTTTCCGCCCATCTCTTCGCCGTGTTCCAAGGCCTCCTCAAGGTGCTCGCCGGCATCGACACGAACTTTACGGTCACCTCAAAGGCTTCAGATGAGGACGGAGACTTTGCGGAGCTATACATGTTCAAGTGGACCACACTTTTGATACCTCCCACTACCCTCCTGATCATAAACCTAGTAGGAGTGGTCGCAGGTATCTCGTATGCCATTAACAGCGGTTATCAGTCGTGGGGTCCTTTATTCGGAAAGCTCTTTTTCGCCTTTTGGGTGATTGTTCATCTCTACCCTTTCCTCAAGGGTCTGATGGGGAGGCAGAATCGAACGCCGACGATCGTTGTGGTCTGGTCTATCCTCCTCGCCTCTATCTTCAGCCTTTTGTGGGTTCGGATCGACCCTTTTACGACCAGGGTTACGGGACCAGATGTGCAACAATGTGGGATCAATTGCTAG

Network for GWHGAAEX018270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.5	zf-UDP	14	86	9.00E-36
PF03552.13	Cellulose_synt	349	1046	0

Protein Sequence

>GWHPAAEX018270
MAVEGETRVKMLTKNENGQVCQICGDGVGNTVEGDVFVACDVCGFPVCRPCYDYERKHGDQCCPQCKTKYKRHKGSPPIHGEEGDEVDADDASDFDYPSGNHDHKQKAADKVIGWHTNYEKGGNHGLPKYDSGEIPRSHFPLLTHSRSQELSGELPGASPDHMMSPGNIGKRMHPLPYVNHSPNPSREFSGGFGNVAWKERVDGWKMKQDKNIPPMATNVTSHAPSEGRAVTDIDAATDYNMEDALFNDETRQPLSRKVSIPSSRINPYRMVIALRLVILCIFLHYRITNPVRNAYALWLLSVICEIWFAISWILDQFPKWFPVNRETYLDRLSIRYDREGEPSQLAAVDIFVSTVDPSKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRVNGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGSYLLNLDCDHYINNSKALREAMCFLMDPNLGRSVCYVQFPQRFDGIDRNDRYANRNTVFFDVSSILNVCISGKVYYGTGRRTHICIYIYIYDFFGLKPYFLSPTNPKKRKKMLNHDNIIKSISYCAGFDDEKSLLMSQMSLEKRFGLSSVFVASTLMEHGGVPQSATPESLLKEAIHVISCGYEDKSEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCTLPAVCLLTGKFIIPQISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVQQCGINC

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	Biological Process	cellulose biosynthetic process
GO:0016760	Molecular Function	cellulose synthase (UDP-forming) activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	97.380
SRP064423	SRR2545915	Juvenile tuber	188.870
SRP108465	SRR5643513	five period of Gastrodia elata	130.440
	SRR5643514	five period of Gastrodia elata	116.630
	SRR5643515	five period of Gastrodia elata	140.100
	SRR5643524	five period of Gastrodia elata	137.020
	SRR5643525	five period of Gastrodia elata	151.430
	SRR5643528	five period of Gastrodia elata	134.540
	SRR5643658	five period of Gastrodia elata	184.850
	SRR5643659	five period of Gastrodia elata	169.980
	SRR5643660	five period of Gastrodia elata	175.090
	SRR5643661	five period of Gastrodia elata	168.140
	SRR5643662	five period of Gastrodia elata	141.540
	SRR5643663	five period of Gastrodia elata	146.950
	SRR5643664	five period of Gastrodia elata	112.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	131.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	110.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	130.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	165.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	121.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	147.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	152.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	143.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	137.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	125.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	98.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	98.530
SRP279888	Gastro	Gastrodia elata tuber	106.10
	Juven	Juvenile tuber	159.48
	Mother_Gastro	Mother tuber of Gastrodia elata	115.87
	Mother_Juven	Mother tuber of Juvenile	121.17