Detail information of GWHGAAEX018272/evm.TU.scaffold_92.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297625173|ref|YP_003706607.1|9.00E-47MATE efflux family protein [Truepera radiovictrix DSM 17093]
KOGKOG13470Uncharacterized membrane protein, predicted efflux pump
nrgi|743870558|ref|XP_010906076.1|0PREDICTED: MATE efflux family protein 1 isoform X2 [Elaeis guineensis]
Swissprottr|Q9SYD6|MATE1_ARATH0MATE efflux family protein 1
trEMBLtr|M0SIZ4|M0SIZ4_MUSAM0MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT1G513400MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000093376338404315+
Transcript Sequence

Network for GWHGAAEX018272

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE1732652.60E-12
PF01554.17MatE3264731.10E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015297Molecular Functionantiporter activity
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.740
SRR2545915Juvenile tuber81.590
SRP108465SRR5643513five period of Gastrodia elata116.440
SRR5643514five period of Gastrodia elata93.740
SRR5643515five period of Gastrodia elata129.520
SRR5643524five period of Gastrodia elata120.790
SRR5643525five period of Gastrodia elata153.140
SRR5643528five period of Gastrodia elata184.720
SRR5643658five period of Gastrodia elata136.800
SRR5643659five period of Gastrodia elata101.710
SRR5643660five period of Gastrodia elata110.050
SRR5643661five period of Gastrodia elata99.860
SRR5643662five period of Gastrodia elata97.580
SRR5643663five period of Gastrodia elata103.810
SRR5643664five period of Gastrodia elata65.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.040
SRR6049655Rhizomagastrodiae_C368-T10_good_158.150
SRR6049656Rhizomagastrodiae_C368-T07_good_155.110
SRR6049657Rhizomagastrodiae_C368-T07_good_144.650
SRR6049658Rhizomagastrodiae_C368-T04_good_135.190
SRR6049659Rhizomagastrodiae_C368-T04_good_134.010
SRR6049660Rhizomagastrodiae_C368-T01_good_147.140
SRR6049661Rhizomagastrodiae_C368-T04_good_137.140
SRR6049662Rhizomagastrodiae_C368-T01_good_167.850
SRR6049663Rhizomagastrodiae_C368-T01_good_156.450
SRR6049664Rhizomagastrodiae_C368-T10_good_173.830
SRR6049665Rhizomagastrodiae_C368-T10_good_173.830
SRP279888GastroGastrodia elata tuber 121.47
JuvenJuvenile tuber78.87
Mother_GastroMother tuber of Gastrodia elata 141.17
Mother_JuvenMother tuber of Juvenile 110.46