Gene detail

Detail information of GWHGAAEX018274/evm.TU.scaffold_92.11

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	3.00E-90	FOG: PPR repeat
nr	gi\|743878819\|ref\|XP_010908276.1\|	6.03E-176	PREDICTED: pentatricopeptide repeat-containing protein At4g38010-like [Elaeis guineensis]
Swissprot	tr\|Q9SX45\|PPR75_ARATH	1.00E-90	Pentatricopeptide repeat-containing protein At1g50270
trEMBL	tr\|A0A0A0LXJ1\|A0A0A0LXJ1_CUCSA	3.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:KGN66483.1}
TAIR	AT1G50270	3.00E-90	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	445098	447597	+

Transcript Sequence
>GWHTAAEX018274 TTCACATTATAACATGTTACTTCATCCACGAGAGCTCGCCCAAATTCAAGCCCACCTAACCAAAACCCTAAACCCCAATTTTCTGAACACCATACTAAGAGCTCTAACGCTATCCAAAACGCCAGAGAAAGTCATCCCAATCTACAACCAGATGCTCCTCTACCCTTCTTCCCGCCACAACCATTTCACCTTTACCTTCGTCCTCAAAGCCTGTGCCATTCTCGCCCCCTTCTTCATTCCAAAGGGCTGCGAAGTGCACGCTCGCGCTCTCAAGTCCGGTCACCACTCCGACCTTTTCGTTCAGAATACCCTCATCGCGTTCTACTCAGCCGCATTTGACGTCTCCTCCTGCCGTACAGTCTTCTCTGAAATCTTATCTCCGGACGTCGTGTCTTGGACCTCCCTAGTCTCTGCGTTCACGAACAATGGTTACCCAAGTGAAGCCCTCCTCGTTTTTGCTTCTATGGATGTTGAGCCAAATGAAGTGACGCTCGTAAGCGCCCTCTCTGCTTGTTCAAAGCTTAACGATGTCAACTTGGGGAATATTCTTCATGCTATTTGTATTAGGAGGTCTGGTGGCCATGGACGTAATGTTATTTTGGACAATGCTTTGCTGAATATGTTTCTGGAATGTGGTGTCTTCGCTACCACAGTTCAGCTGTTCGGCTTAATGTCTCATAAAGATGTTGTTTCTGGAACTACAATGATTTGTGGCTATGTGCAACATGGAAGATTTGTTGAAGCTATAAATATGTTCGCTGAACTAGTAAGAGATGCTGAAATATTGCCTAATGAATTGACAGTGGCTTGTGTCTTGAAAGCCTGTGCTTTTGTAGGGATTTTGAGAACTGGAGAGTTGGTGCATTCTTTCTCTCTCAGGAATGGCATTGATGTAGATGGTATTGTAGGGAATGCTCTCATTCACATGTATTCTGAGTGTGGCACCATAAGACTGGCTCTTTCTATTTTCAGTGGGCTTATATACCGGGATTTGATTTCTTGGTGTATAATTATAAGGGGAATGGCAACAAATGGAAAGTCTGAATATGCAATACAATTGTTTTCCTTGATGTTGTGTTATGGTGTTCAACCAGACAGTATTGCCTTTCTTGCAGTAATGTCTGCCTGTTGCCATGCTGGTTTAATTGAATATGGTTTGATGTTCTTCAGGGCAATGTATGAAGTTTATGGCATTCTTCCAGAAAAGCAGCACTTTACATGCATAATTGACACTTTTGGTCGAGCTGCATGTTTGAAGGAAGCTGAGGATTTTTTCATCAGTATGCCAATGAAGCCTGACAAATGTGTGTGGGGAGCCTTATTGAGTGCTTGTAAGATATATGGTGTTAATGATGCTGTGTATGAGCGAATTCAAAGGAGGGTTCTTCATTCAGGAATGGTTTTAGGAGGAGGAACTTATGCACTTGTATCCAACTTGCTGGCTGAGTCTGAGAAATGGGATGAGTCTAACAATGTCAGGAAACGATTGAACACACAGAATATTAATAAACTGGCTGGTTATAGTTGGATTGAACTAGGTTGATTGGAAAATTTGTTACATTATTAAGTTATTGGATTCAAGGTTTCTGAAATTGAACTAGATTGGCTGCTAAACTGGTATGGCTACATGCAAAACTGCTCCAACGGCAAACCACCCTTGGGATTGAAATGTGGATCCTAGCTGGTTCAAACCCTTAAAACCAGTTCTATTACAGATTATAATCCTAGGTGTGAATTCATTTTGAATGATCGAGATTAGTTACTAAAAGATTAAGAGTTTAAATATCTTATCTAATATTCACACTTTAACCTCCTAAGAAGGCAATGGAAAATGCAGGCAGAGGGGCAAGCCTTTTGTTCCTTCTTTTTTCATGTTTGTAAGAACGCTTTATCCCTTCTTCCCTGGAAAAGAAAGTGGAGATCAAGCATCGTTGACAGCCAATTGAAGTTTCTCTTAGCCTTTTTTCTGGCAGAAGTGCCAATCTTGAGGAAAAATGGGTAAAGAGTGCCACATGATTTTCGATATCAGATGCTAGAAAATCTCAAACAAATATCTCTTTAGTACACTGCAACATAAAAAAAATTAATGAGAATCAAAAACCATATATTGAGCAGTTGATTGAGGGGAAGGGAGGTTCTTCCAAGTTTCAAAATATAACCACACTTTACACTAGATTAGAAAAAAGAAATATTAATGATAGCATATGTTTTTGTTCCTTCAGAACAACTCCAAGGTTTGTGTTTTATCAGCAAAAAGAAGTTGGTCGTTGTGCAAGTGTGAGTGGCGCGGTGTTTCTTAAATGGTCGTTGTGCAAACATGGATTGGCCGTTTACACAAAAATGCTGTGGATGATATCGCTGCCATTGGGCTTTGTACTGAGTATTTTCTTTGTGTTGAATGAGACTGAATTGTTGAGTTATTCCAAGGAAAATGTATTGGATGAATTTTTATGTTTTTTTTAGTTTGTTGTCTACACGATGTTTCATTTTTTTAATACGT

Network for GWHGAAEX018274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	126	151	0.00043
PF13041.5	PPR_2	223	272	2.00E-07
PF13041.5	PPR_2	326	374	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.400
SRP064423	SRR2545915	Juvenile tuber	1.830
SRP108465	SRR5643513	five period of Gastrodia elata	0.740
	SRR5643514	five period of Gastrodia elata	0.780
	SRR5643515	five period of Gastrodia elata	0.630
	SRR5643524	five period of Gastrodia elata	0.820
	SRR5643525	five period of Gastrodia elata	0.120
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	1.460
	SRR5643660	five period of Gastrodia elata	1.510
	SRR5643661	five period of Gastrodia elata	1.200
	SRR5643662	five period of Gastrodia elata	1.420
	SRR5643663	five period of Gastrodia elata	1.740
	SRR5643664	five period of Gastrodia elata	1.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.930
SRP279888	Gastro	Gastrodia elata tuber	1.55
	Juven	Juvenile tuber	1.12
	Mother_Gastro	Mother tuber of Gastrodia elata	0.27
	Mother_Juven	Mother tuber of Juvenile	0.34