Detail information of GWHGAAEX018276/evm.TU.scaffold_92.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1952 | 0 | Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains |
| nr | gi|672131438|ref|XP_008789280.1| | 0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SY59|NFXL1_ARATH | 0 | NF-X1-type zinc finger protein NFXL1 |
| trEMBL | tr|Q652W3|Q652W3_ORYSJ | 0 | Putative TF-like protein {ECO:0000313|EMBL:BAD46154.1} |
| TAIR | AT1G10170 | 0 | NF-X-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 494652 | 497798 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018276
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01422.16 | zf-NF-X1 | 205 | 220 | 7.6 |
| PF01422.16 | zf-NF-X1 | 258 | 275 | 0.0021 |
| PF01422.16 | zf-NF-X1 | 322 | 339 | 0.21 |
| PF01422.16 | zf-NF-X1 | 374 | 397 | 1.5 |
| PF01422.16 | zf-NF-X1 | 438 | 449 | 17 |
| PF01422.16 | zf-NF-X1 | 478 | 495 | 0.00014 |
| PF01422.16 | zf-NF-X1 | 535 | 552 | 11 |
| PF01422.16 | zf-NF-X1 | 588 | 603 | 0.0039 |
| PF01422.16 | zf-NF-X1 | 620 | 646 | 7.9 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-X1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.580 |
| SRR2545915 | Juvenile tuber | 15.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.180 |
| SRR5643514 | five period of Gastrodia elata | 14.250 | |
| SRR5643515 | five period of Gastrodia elata | 18.840 | |
| SRR5643524 | five period of Gastrodia elata | 14.740 | |
| SRR5643525 | five period of Gastrodia elata | 26.900 | |
| SRR5643528 | five period of Gastrodia elata | 23.200 | |
| SRR5643658 | five period of Gastrodia elata | 22.060 | |
| SRR5643659 | five period of Gastrodia elata | 22.210 | |
| SRR5643660 | five period of Gastrodia elata | 27.970 | |
| SRR5643661 | five period of Gastrodia elata | 24.080 | |
| SRR5643662 | five period of Gastrodia elata | 27.200 | |
| SRR5643663 | five period of Gastrodia elata | 22.950 | |
| SRR5643664 | five period of Gastrodia elata | 31.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.91 |
| Juven | Juvenile tuber | 18.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.80 | |
| Mother_Juven | Mother tuber of Juvenile | 18.98 |