Gene detail

Detail information of GWHGAAEX018278/evm.TU.scaffold_92.15

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|383457692\|ref\|YP_005371681.1\|	putative xanthine dehydrogenase [Corallococcus coralloides DSM 2259]
KOG	KOG0430	Xanthine dehydrogenase
nr	gi\|743838102\|ref\|XP_010936601.1\|	PREDICTED: xanthine dehydrogenase-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6AUV1\|XDH_ORYSJ	Xanthine dehydrogenase
trEMBL	tr\|F6GU50\|F6GU50_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43714.1}
TAIR	AT4G34890	xanthine dehydrogenase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	543220	613371	+

Transcript Sequence
>GWHTAAEX018278 CGACGATAACGAGGCTCAAGAGAGTTCCTGGAAAGTGTTGCTGATTTTAAGTGTGTTCTACTTCTAATTGACAGGCGATCTCCATCTTCTTCAATTCACGCTGTGTTTCCTTGGGTACGAAGAAAGGATTAAGGTCACACTGTATGGGTTCGATCACTCAAAGGGACGAGGTGGAAGCGTCTACGATAGCGGTGCACGAATGGTCGTCGGAGGCGATCATATACATCAACGGCGCCCGTCATGTTCTTCCCGATAGATTGGCTCATCTCACTCTTCTCCAGTATCTCAGGGAAATTGGTTTGATGGGGAGTAAGCTTGGGTGTGGAGAAGGTGGTTGTGGCGCTTGCACAGTAATGGTTTCAGATTATGATCGGTCTTCAAGGAAATCAGTGCATTATGCAGTTAATGCGTGTTTGGCACCATTATATTCCGTCGAAGGAATGCACATTATCACTGTTGAGGGTCTTGGTTCTATTCAGAGTAGCTTGCATTCTGTTCAGGAAGCTTTGGCCCAAGCCCATGGATCTCAGTGTGGGTTTTGCACCCCTGGATTTGTGATGTCCATGTACGCATTGCTGCGGTCAAACAATTTATCTCCTAGCGAAGAGCAGATTGATGAATGCCTCTCAGGAAATTTGTGTCGCTGTACTGGATATAGGCCAATAATTGATGCCTTCCGTATTTTTGCAAAGACTGATAACTCTGTGCACACTAAATCAGATCCTGCAAATGGCCAATTTATTTGCCCTTCATCTGGAAAACCTTGTTCATGCAGAGAAAGTAAAGTTCTTAGCTATGAAAGCTCTGCTAGCAGTGTGACTTGTAAGGAGCACAAAGCTGTTTCACGCAATGTAAATGATGGAAGCTTATACAAAGATACGGAACTTATTTTCCCGCCAGAGCTGGTTTTGAGAAATGACCTTCCACTGAAGTTACATGGTTTAGATGGAATTAGCTGGTATCGTCCCATAAAATTTAAACATCTGCTGAACCTCAAGTCACTTTACCCAGATGCAAAGCTTGTTGTTGGAAATACGGAGGTAGGAATTGAAACGAATTTTAAAAATGCACAATATCCAATCCTTATCTCTGCCACGCATATTCCTGAGCTCAATGTTTTGAGCATTAATGACAATGGTCTTGAGATAGGCTCTTCAGTACGATTGAGCAGACTTCAAGAGGTTCTTGTAAAAGTGATCAAAGAACGAGAAGTCCATGAAACATCTTCTTGCAGGGCTATTTGTGATCAGATAAAATGGTTTGCTGGAAAGCAGGTGAAAAATGTTGCTTCTGTTGGCGGAAATATTTGCACTGCTAGTCCAATTTCAGATTTAAATCCTCTTTGGATGGCTTCTAGAGCAGAATTTCGTGTTGTTAACCCAAAAGGGAGTGTCAGAATTGTTCCTGCTAAAAGTTTCTTTCTTGGTTACCGCAAGGTTGATCTTGCTCAAGGTGAAATATTACTTTCAATTTTCTTACCATGGAACAACCATTTTGAGTTCGTGAAAGAATTTAAGCAGGCACACCGGAGAGAAGATGATATTGCTCTTGTGAATGCTGGAATGCGCGTGTGTCTAAATGAAGTAGGGTCAAAATGGCTGGTTTCAGATATTTGCATCGTATATGGTGGAGTTGCACCAATTTCTCTAATTGCCCCAAAGACGGAAAAATATTTAATGGGAAAGATATGGGATAAAAGCTTATTGCAGGAATCTTTAAAAATATTGAAAGTTGATGTTCCTCTCACAGGCGATGCACCTGGTGGGATGGTTGAATTCCGCAAATCACTTGTATTAAGTTTCTTTTTCAAATTTTTTCTGTGGGTTACTCAGCAGATGAATGAGAATGGATTTGATAAGGAATGGCTGGATTTAACCCATCTTTCTGCCATACAACCTTATTCTAAACCTTTTTCTTGTGGAAGTCAAAGTTACGAAATAATATCACAAGGAACTGCTGTTGGTTTGCCAATGATTCATCTTTCTGCTAAACTTCAGGTGTCCGGGAGGGCTGAGTACACTGACGATATTCCCACTCCTCCAAATACCCTTCATGCTGCTCTTGTTCTGAGCAAAAAAGCTCATGCACGCATATTGTCTGTAGATGATACACTTGCTAGATCTTCATCTGGTTTTGCAGGATTGTTCTTAGCAAAAGATGTTCCTTGTAGCAATAAAATAGGACCTATAGTCCATGATGAAGAGGTATTTGCTTCAGAAATTGTTACTTGTGTTGGCCAGGTTATTGGAATTGTTGTAGCTGATACACAAAGAAATGCAAAAGCAGCATCGAAGAAAGTAGTTATTCAGTATGAAGAGCTTAATCCAATTCTTTCTATTAGAGATGCTATTCAATGTAGCAGTTTCTATCCAAACAGCAAAAGATGTCTGGTAAAAGGAGACGTTGAATGGTGCTTCCAGTCAGGACTTTGTGACAAGGTCTTAGAAGGGGAAGTTCAAGTAGGAGGTCAGGAACATTTTTATTTGGAACCAAACTGCAGTTTGATTTGGCCAGTTGATAGTGGAAATGAAGTTCATATGATTTCCTCTACTCAATCTCCTCAAAAGCACCAAGCCACTGTTGCTTGTGTTCTTGGTTTACCATTTTCAAAAGTTGTTTGCAAGACAAAGCGCATTGGTGGCGGGTTTGGAGGGAAGGAAACAAGATCTGCTTTCATTGCTGCTGCCGCTTGTGTACCAGCTTATCTCTTAAACCGGCCTGTTAAAATTACATTGGATAGGGATATAGACATGATGATAACTGGACAGAGGCATAGTTTTCTTGGGAAGTACAAGATTGGTTTCACAAATGCTGGGAAGATTCTTGCTTTGGACCTTGAACTCTATAACAATGCTGGAAATTCACTTGACTTGTCAGCTTCTGTCCTCGAGCGGGCAATGTTCCACTCGGATAATGTCTATGACATACCTCATATTAGGGTTAACGGACAAGTTTGTTATACAAATTTGCCAAGTAATACAGCTTTCCGTGGATTTGGTGGGCCACAAGGTATGCTAATTACAGAGAATTGGATTCAACGAGTTGCCATGGAGCTTCGAAGATCTCCTGAAGAGATAAGAGAAAAAAACTTTCACCGGGAAGGACATATATTGCATTATGGTCAAGAAATACGGAATTGTACATTACATTTGGTATGGGATGAACTGAAGGCAACCTGCAACTTTTCTAAGGCTCGTGAATTAGTAGATCAATTCAATCTTTGCAGTCGCTGGAGGAAGCGTGGTGCCGCAATGATACCTACAAAATTTGGGATCTCTTTTACAACTAAATTTATGAACCAGGCTGGTGCTCTTGTTCAAGTTTATACTGATGGCACTGTTTTGGTGACTCACGGAGGTGTTGAGATGGGGCAGGGCCTGCACACAAAAGTTGCTCAAGTTGCTGCATCATCTTTCAATATCCCTCTTAGTGCTATTTTTATTTCCGAGACTAGTACAGATAAGGTCCCTAATGCATCGCCTACAGCTGCTTCTGCCAGTTCAGATATGTATGGTGCAGCAGTTTTAGATGCATGCGAGCAAATTAAGGCACGGATGAAACCAATTGCAGATAGAAACAGGCATGCTTCTTTTTCTGAGTTAGCAATGGCATGCCTTTTGGAACGTGTGGATCTCTCTGCTCATGGGTTTTACATCACTCCAGATATTGGTTTTGACTGGCAAGTTGGGAAGGGGGCTCCTTTTTCATACTATACTTACGGAGCGGCGTGTGCTGAAGTTGAGATTGACTGCCTCACTGGAGATTTCTATACACGGACAGCTTATATTGTTATGGATCTTGGATACTCTCTCAACCAAGCCATCGACATTGGACAGGTTGAAGGAGCATTTGTGCAAGGTTTGGGTTGGGTTGCCTTGGAAGAGCTGAAATGGGGTGATGCAGATCACAAGTGGATTCAAACCGGTAACCTGTACACTAGTGGTCCGGGCACTTACAAAATCCCATCTCTGAATGATATTCCTATTAATTTCCATGTCTCCCTTCTCAAGGGGGTTCCAAATCCGAAGGCCATCCACTCCTCAAAGGCTGTTGGTGAACCACCATTTTTTTTAGCCTCGTGCGTGCTCTTTGCGATCAAAGATGCAATCATTGCTGCGCGGGCAGAGGAAGGCATTCATAACTGGTTTCCGCTTGACAATCCTGCAACACCTGAGAGGATACGGATGGCTTGCATTGATGACTTTACAAGGGAATTTGCAGGCTCTGACTACCATTCTAAACTCAGTATTTGATTCTGATTGAATTTCTTAAGGACCTCCAGGATAAATCCAGAAAACAACTGAAGAGCTCTTAGGACATTGTAAGGCTCATTACTCAACAGTTTGTTCAAAGTGTTACATGTATCATAGAATTGTCTTGTTATGTATATATTGTTAACATAAATCAGAATTTATTGAAGGAGCAATCCTTTTAACTTTTCCTGTATTCCCTATATGTTGAAATACAAGAAAAATAATGTCTTTAGAAGAATCTAGAGCCAATTACAACTCACACAATGAATCAATCAGAAA

Network for GWHGAAEX018278

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00111.26	Fer2	28	93	5.90E-08
PF01799.19	Fer2_2	104	178	8.70E-32
PF00941.20	FAD_binding_5	270	447	7.10E-47
PF03450.16	CO_deh_flav_C	456	561	5.80E-28
PF01315.21	Ald_Xan_dh_C	620	727	4.80E-30
PF02738.17	Ald_Xan_dh_C2	749	1280	8.60E-190

Protein Sequence

>GWHPAAEX018278
MGSITQRDEVEASTIAVHEWSSEAIIYINGARHVLPDRLAHLTLLQYLREIGLMGSKLGCGEGGCGACTVMVSDYDRSSRKSVHYAVNACLAPLYSVEGMHIITVEGLGSIQSSLHSVQEALAQAHGSQCGFCTPGFVMSMYALLRSNNLSPSEEQIDECLSGNLCRCTGYRPIIDAFRIFAKTDNSVHTKSDPANGQFICPSSGKPCSCRESKVLSYESSASSVTCKEHKAVSRNVNDGSLYKDTELIFPPELVLRNDLPLKLHGLDGISWYRPIKFKHLLNLKSLYPDAKLVVGNTEVGIETNFKNAQYPILISATHIPELNVLSINDNGLEIGSSVRLSRLQEVLVKVIKEREVHETSSCRAICDQIKWFAGKQVKNVASVGGNICTASPISDLNPLWMASRAEFRVVNPKGSVRIVPAKSFFLGYRKVDLAQGEILLSIFLPWNNHFEFVKEFKQAHRREDDIALVNAGMRVCLNEVGSKWLVSDICIVYGGVAPISLIAPKTEKYLMGKIWDKSLLQESLKILKVDVPLTGDAPGGMVEFRKSLVLSFFFKFFLWVTQQMNENGFDKEWLDLTHLSAIQPYSKPFSCGSQSYEIISQGTAVGLPMIHLSAKLQVSGRAEYTDDIPTPPNTLHAALVLSKKAHARILSVDDTLARSSSGFAGLFLAKDVPCSNKIGPIVHDEEVFASEIVTCVGQVIGIVVADTQRNAKAASKKVVIQYEELNPILSIRDAIQCSSFYPNSKRCLVKGDVEWCFQSGLCDKVLEGEVQVGGQEHFYLEPNCSLIWPVDSGNEVHMISSTQSPQKHQATVACVLGLPFSKVVCKTKRIGGGFGGKETRSAFIAAAACVPAYLLNRPVKITLDRDIDMMITGQRHSFLGKYKIGFTNAGKILALDLELYNNAGNSLDLSASVLERAMFHSDNVYDIPHIRVNGQVCYTNLPSNTAFRGFGGPQGMLITENWIQRVAMELRRSPEEIREKNFHREGHILHYGQEIRNCTLHLVWDELKATCNFSKARELVDQFNLCSRWRKRGAAMIPTKFGISFTTKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSAIFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMKPIADRNRHASFSELAMACLLERVDLSAHGFYITPDIGFDWQVGKGAPFSYYTYGAACAEVEIDCLTGDFYTRTAYIVMDLGYSLNQAIDIGQVEGAFVQGLGWVALEELKWGDADHKWIQTGNLYTSGPGTYKIPSLNDIPINFHVSLLKGVPNPKAIHSSKAVGEPPFFLASCVLFAIKDAIIAARAEEGIHNWFPLDNPATPERIRMACIDDFTREFAGSDYHSKLSI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00106	XDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Purine metabolism	map00230
		Caffeine metabolism	map00232
		Drug metabolism - other enzymes	map00983
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0051536	Molecular Function	iron-sulfur cluster binding
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding
GO:0009055	Molecular Function	electron carrier activity
GO:0071949	Molecular Function	FAD binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0005506	Molecular Function	iron ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.650
SRP064423	SRR2545915	Juvenile tuber	40.660
SRP108465	SRR5643513	five period of Gastrodia elata	31.760
	SRR5643514	five period of Gastrodia elata	32.180
	SRR5643515	five period of Gastrodia elata	30.930
	SRR5643524	five period of Gastrodia elata	34.820
	SRR5643525	five period of Gastrodia elata	29.970
	SRR5643528	five period of Gastrodia elata	28.720
	SRR5643658	five period of Gastrodia elata	38.040
	SRR5643659	five period of Gastrodia elata	21.980
	SRR5643660	five period of Gastrodia elata	23.240
	SRR5643661	five period of Gastrodia elata	18.880
	SRR5643662	five period of Gastrodia elata	26.260
	SRR5643663	five period of Gastrodia elata	27.450
	SRR5643664	five period of Gastrodia elata	28.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	73.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	96.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.980
SRP279888	Gastro	Gastrodia elata tuber	31.99
	Juven	Juvenile tuber	34.59
	Mother_Gastro	Mother tuber of Gastrodia elata	15.88
	Mother_Juven	Mother tuber of Juvenile	24.48