Detail information of GWHGAAEX018289/evm.TU.scaffold_92.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159040755|ref|YP_001540007.1|4.00E-45exosome complex RNA-binding protein Rrp42 [Caldivirga maquilingensis IC-167]
KOGKOG16136.00E-128Exosomal 3'-5' exoribonuclease complex, subunit Rrp43
nrgi|695041554|ref|XP_009408387.1|3.64E-150PREDICTED: exosome complex component RRP43 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M209|CER7_ARATH3.00E-24Protein ECERIFERUM 7
trEMBLtr|M0TE39|M0TE39_MUSAM1.00E-150Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P02490_001}
TAIRAT1G600806.00E-1283'-5'-exoribonuclease family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000093839748912256+
Transcript Sequence

Network for GWHGAAEX018289

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.20RNase_PH591924.70E-25
PF03725.14RNase_PH_C2302941.60E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12586RRP43, EXOSC8, OIP2 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.620
SRR2545915Juvenile tuber39.060
SRP108465SRR5643513five period of Gastrodia elata47.750
SRR5643514five period of Gastrodia elata47.900
SRR5643515five period of Gastrodia elata43.350
SRR5643524five period of Gastrodia elata47.410
SRR5643525five period of Gastrodia elata67.540
SRR5643528five period of Gastrodia elata57.110
SRR5643658five period of Gastrodia elata62.650
SRR5643659five period of Gastrodia elata51.670
SRR5643660five period of Gastrodia elata58.190
SRR5643661five period of Gastrodia elata51.760
SRR5643662five period of Gastrodia elata52.020
SRR5643663five period of Gastrodia elata48.400
SRR5643664five period of Gastrodia elata60.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_148.630
SRR6049655Rhizomagastrodiae_C368-T10_good_148.550
SRR6049656Rhizomagastrodiae_C368-T07_good_144.920
SRR6049657Rhizomagastrodiae_C368-T07_good_156.170
SRR6049658Rhizomagastrodiae_C368-T04_good_157.600
SRR6049659Rhizomagastrodiae_C368-T04_good_166.260
SRR6049660Rhizomagastrodiae_C368-T01_good_148.840
SRR6049661Rhizomagastrodiae_C368-T04_good_152.380
SRR6049662Rhizomagastrodiae_C368-T01_good_138.000
SRR6049663Rhizomagastrodiae_C368-T01_good_140.690
SRR6049664Rhizomagastrodiae_C368-T10_good_151.920
SRR6049665Rhizomagastrodiae_C368-T10_good_151.920
SRP279888GastroGastrodia elata tuber 58.18
JuvenJuvenile tuber69.85
Mother_GastroMother tuber of Gastrodia elata 60.37
Mother_JuvenMother tuber of Juvenile 68.10