Gene detail

Detail information of GWHGAAEX018290/evm.TU.scaffold_92.33

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2657	Transmembrane glycoprotein nicastrin
nr	gi\|743823450\|ref\|XP_010932529.1\|	PREDICTED: LOW QUALITY PROTEIN: nicastrin [Elaeis guineensis]
Swissprot	tr\|Q8GUM5\|NICA_ARATH	Nicastrin (Precursor)
trEMBL	tr\|W1PU54\|W1PU54_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN11364.1}
TAIR	AT3G52640	Zn-dependent exopeptidases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	953922	1038487	+

Transcript Sequence
>GWHTAAEX018290 AAATAACACAAGCAAAACTGCTACGCAGCTCGAATCCTTAATGATTTATGTCCTGTCCGTGCACCAAAAAGGATAAAGAAAATTGTTAGTATTCTCGTGGCGCGCGGTGCAGGGTGCGCGCTTTACCGTGGACAGACAGAAGGGCTCCCTCCGACTTCTTGTTTCAGTTCAAAGGCAAGCGCGACTCTGGTTTGACCCTTTAGGGTTTTATCCCCATTTGGTCGCACAATGGATCGAGTGCTCACACACTTCGTTGTCTTTGTCTTATTCATCGTTGGTTCCTTTCACCATGTCGCCGGAGAAAGTTACTCATTGAAGTCGGTTCCTGAGCTTGAGAAGGCAATGTATTTCAACGCTGAAGGATACCCTTGTGTTCGACTTTTGAATCTTTCTGGTGAAATTGGATGTTCAAACCCCGGCCATAAAAAGATTGTTGCACCAATTCTCAGGCTTGAGAAGATAAACGAATCAATGATTAATTCATGTTCTGTCCTCGTCCCTTTAGAAGAGTTGGAAAATTTTCTTTCAAGAGTTTCAAGTGATCCAAAACTTTCCCAAAGGATTGCTGGTATCTTGGTTGAGACAACGGAATTTCAAAATACTTCATTAGGATTTTCCCCAGATGCGAAGTTTCCACAAGCTGAATTTGCAACATATCGAAATCTCAGTTTTGTATGGAACGCTCTTGGTTCCGGTATTATGTTGAATCACTATAATTTTCCGATATTCTTACTTGCTGATGAGAGTACTAAATTGCTAAGAGAGATGTCTACAAAGAATGAGAAGAATTACAAATCATATAAATCAACCGTTGCAGAATTTGATCTCATCATGCAGACAACAAACGTTGAAACTCGTGACTCAGCTTCCTGTCTTCAAAGGCAGTCTTGTCTGCCTTTAGGTGGATACAGTGTCTGGTCTGCATTACCACCGGTTGATAATACCTCGATTGAACTGCCAAATCCTATTTTACTTGTGATGGCTTCCATGGATTCGAGATCACTTTTTCGTGATGTAAGCTTTGGTGCTGATTCCCCTATATCGGGATTGATTGCTTTGTTGGCTGCTGTTGATGCTCTTTCTCATGTTAGTAATTTAAAAGAACTAAAAAAGCAGCTTGTTTTTGCGGTTTTTACTGGTGAGGCATGGGGTTATCTTGGCAGCAGAAGATTTTTGCTTGAGCTAGATTTGGGTGCAGACTATTTGAAAGGTCTTGACAGTGCAATGATCGAACAGGCCTTGGAAATTGGATCTGTTGGCAGAGGCTCAAGTCAAGGCGTGACAACCTTTTTTGCACACCCAGGACAGGATTCATCTTCAACAAAGGAAATTTTAGATGCTTTGGAGAAAGCTGGAGTATCACTAGGCTCAGATAATGTCAATATAAAAAAGGCTAATGTATCAAATCCTGGTGTACCACCATCTTCACTGATGTCTTTTCTTAGAAAGAATTCTTCGATCTCTGGGGTGGTTTTGGAGGACTTCGACACATCCTTCACTAACAAGTTCTACCATAGTCATCTGGACACTACTTCAAATATCAACTCTTCGTCTGTAGCTGCCGCAGCTATTATGGTTGCACGTACTCTGTATATTCTTGCCAGTGGCAGCCCGTTCTTGAATCTGATGGTTCTGAACTCCATAAAAGTCAATGCTTCCTTGGTAGAAGAGCTGGTGGGATGCTTAACGGCTTGCAAGCCAGGTTTTTCTTGTGGCATTGTGAAGCAGTTCATATCTCCAAGCAGCGTGTGCCCCAGCCACTATGTTGGTGTTTTTGTTGACCCGCCACCCCCTTATTCTGAAACCCTAAATCCTCGAAATGCAGACGATACTTCTCGGTTTGTTTGGAATTTCTTAGCTGATCGAACCTCCACTCCCCAAAAAAATGCAAGCCCTTGCAAGGGAGGCTGTCAAACCCACGCCGAAGTCTGTGTGGCTATGGAAACTGAGAACGGCAGATGCCTTGAATCCACTACCAGGTATGTGCCAGCATACTCCACTCGCCTGAAATACGAAGGCAACTCATGGCAGGTGCTGCCTGCCAATGTGTCTGATCCATTGAGTTTAGTCGACCCAGTGTGGACTGAGAGTTACTGGAATAACATTGGGTTGAGGGTTTACACTGCCCAGAGTTCTGCTTATGATAACTTTGTCCTTCTGGCCGGAATCTCTGTTACTGCTGCCGCCTACATCGCATCTTTAGTGGTCAAATCCTTACTATTAAAAGCTCTCAAGCATGATTGAAACCAGCCCCCTTTCTTACATTTTGTTGGCTGGCAAATTGTCTTGTTTCATAATCTCTTTGAAGTTCTTATTGGATCGGATTACCACGGCTACTGCAAAAACATCAATTTTTTAAAAAATTGCTCGTTTTTTTTCTTTGCACCCTAAACACTTGCGATAGCCCACTTATGTTCAGAGATTTTGCTGATATTTTATTGGAAATTGGTGTTTTATTTGCAGAAATTGCACTAGCATGTAACGTCCTTTTCTGAATCAGACTTTCGCTTGTAGAAATCGAAGAACATGTGTTGTTTGGAAATACAAATCTGGATCAAATGTTAGTAATTACAAATTTGGCAGTTTCGTATGCACGAGTCTAGGAGTTTAGTATATATGAATTGTCTCATTTTAATAGATGTAATTAAGATCAAATATGGTTGGTTTCGTGGCTATTGCATAATTTGAGGGATAGATACAAAGCCTCGCCTTCATTTACCAAATTCTCATCTCCTTTTATCCTTTTGGATAGCAAACTATTCTTGAGGACAACTCAGCAAGTATTTGTATCATTATCA

Network for GWHGAAEX018290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05450.14	Nicastrin	246	455	1.20E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06171	NCSTN	Notch signaling pathway	map04330

Gene Ontology

GO term	Ontology	Name
GO:0016485	Biological Process	protein processing
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.150
SRP064423	SRR2545915	Juvenile tuber	28.030
SRP108465	SRR5643513	five period of Gastrodia elata	15.030
	SRR5643514	five period of Gastrodia elata	15.560
	SRR5643515	five period of Gastrodia elata	14.150
	SRR5643524	five period of Gastrodia elata	16.170
	SRR5643525	five period of Gastrodia elata	12.550
	SRR5643528	five period of Gastrodia elata	11.210
	SRR5643658	five period of Gastrodia elata	12.800
	SRR5643659	five period of Gastrodia elata	13.550
	SRR5643660	five period of Gastrodia elata	12.300
	SRR5643661	five period of Gastrodia elata	13.180
	SRR5643662	five period of Gastrodia elata	11.900
	SRR5643663	five period of Gastrodia elata	14.480
	SRR5643664	five period of Gastrodia elata	13.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.350
SRP279888	Gastro	Gastrodia elata tuber	13.19
	Juven	Juvenile tuber	19.34
	Mother_Gastro	Mother tuber of Gastrodia elata	16.67
	Mother_Juven	Mother tuber of Juvenile	18.02