Gene detail

Detail information of GWHGAAEX018294/evm.TU.scaffold_92.37

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1906	5.00E-169	DNA polymerase sigma
nr	gi\|743756968\|ref\|XP_010919583.1\|	0	PREDICTED: non-canonical poly(A) RNA polymerase PAPD5-like [Elaeis guineensis]
trEMBL	tr\|M0TY18\|M0TY18_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P06590_001}
TAIR	AT5G53770	5.00E-169	Nucleotidyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	1204444	1243955	+

Transcript Sequence
>GWHTAAEX018294 ATGATCAATTTAAGGGTTGACGAAGATGCGACGACAACAACAACACAAATGGATCGGCCCAATGAAAAGAAAAATGTGTTAGGAATGCCAGAAGAATCCGTCGGCGTGGCCTTCGATCATCCGGGGATGGAGAAAGAGACGGCTACCATAAGCTATGTATACGAGACCCTCGATCCTTTGGAATTTTCCGGCGGCGAACAATACCCCGATGCCTCAGGATCGTACTCCGTTTACCGGACCGAAATTTCGGCATCCTCCGACCTAATCATCGACATTCCGGTCTCCGATTATTTCTCCCTCGATTTATCTGACCTTTCTCCTCCTCACGGAAACGTCGACCACTCCCTTTCCCTCCAAATAGTTTCCACTGCTGCCGCTCCTTGTTCGCCGGAGGAGGCTCGCCTGATTACTTCCGAGTCGACATGGTTTCGCGCAGGGAGCAAGTTTCGGAGTCCCATGCTTCAACTTCACAAGGAGATACTTGACTTTTCTGAATTTGTTGCACCAACCCCTGAAGAACAAGTAAAACGAGCTACTGCTGTAGATCGTGTTTTTCAAGTGGTCAAATATATTTGGCCTCACTGCAGAGTGGAAGTTTTTGGATCATTCAAAACGGGTCTCTATCTTCCCACTAGTGATATTGATGTTGTAATTTTGGATACAAGGGTAAACACTCCTCAAACCGGTCTTTATGCTCTTTCCAGGGCATTGTCACAAAAAGGAATTGCTAAAAAGATGCAGGTTATAGCGAAAGCCCGTGTGCCAATTGTGAAGTTTGTTGAAAAACAGAGTGGAATTGCATTTGATATAAGTTTTGATATGGATAGTGGCCCAAAAGCTGCAAATTTTATTAAGGATGTTGTTGAAAAAATTCCTCCTTTACGACACTTGTGTTTGGTTTTGAAAGTCTTTCTACAGCAGAGAGAATTGAATGAGGTATATTCAGGCGGAATAGGTTCCTATGCCCTTCTTACAATGTTGATAGCACACCTACAGATGCATTGGAGATCAGATATGCATGGGTATCAAAAGTTCATGGAGCATAATTTGGGAGTTCTTTTGGTAAAGTTTTTTGAATTTTACGGCCGCAGATTGAATACTCATGATGTTGGTATCTCTTGTAACTCGTCAAGCACATTCTTTTTAAAGCGTGATAGAGGATTTTTGAACACAGAAAAGCCTTATCTTTTATCTATTGAGGATCCCCAGGCTCCAGATAATGACATCGGGAGAAATTCATTCAACTATTATAAGGTGAAATCCGCCTTTGCTATGGCTTTCTCGTCGTTGACCGATGTGAGAGTCATAAAATCTCTGGGCTCTCAGAAGAGCATACTCGGGACAATAATAAGGCCGGATCCCGCCCTTCTTGACCGGAAAGGCGGGTGCAATGGTCAGCTTACGTTCGACAGCCTCCTTCCGGGTGCTGGCAATTCCGCAGCTCAAGAGCCCGGCTTTGATGGCGATATCATTTACAACTGGAAATTGGCCGACGATGATCCCTTTCCTAGGGACGGCGTGCCTCTTGACAATGTGAGCTTGTCATCTCGAAAGCGAGGGACAAAGCACGAGCATGGCGAGTTCAAAAATATGCGAGCCAGAGATTTGAATGGAAGAGCCAAGAAGGAAAAGAGAGGGGATAGGGACTTCTGTGGCCAGAGATCTCTCCCTCACTCTTTCAGGTGAAGAAGGGTGGTTGCATCATTCCATTGATAAGCTAGCAGTGTAAGCTTTTCCTAGTTTTGTATTTTGGTAAAAATAGCAGTAATTTTACTGAAATGAATCGCATTTCGGTTTGTGTTGGTAAAAATGTATTAGTATTAATTTTTTATAAATGCTTAGTTGGCCCAATGATAATAGCTAAAAGCAGTGATTAGTAAATATAATGTTATTACTCATGGGAGAGTTAGTGCTGGTGCTGTGCGCTTTTAATATTTGGTGGCGCTTTTAAATTTCAGGTCTTCCCGCGCTACTTCGACAGGCTGCCTCTCCATGCTTTATACATAATGTCAGCTAATAATTTGCTCTTGGCACAATGCCTTAATAATTGATTTAGTGCACACGTTGCTTATAGCATGTCATTGCTTCTCTTATATGGTGGTCTTCAGCTTGAGTAGAACATAGAGGCACTACATCTTTGTTTGGTGTGCTTTTACCTAAATTAATTTGTTATTTACTCGTACTGACAGAATGATCCATCAAGCCTCCTTGCTCATGTCTTGGAGTTTTACGGTCAAATGCTCTATATCTGCCTCGTGGCCGTGTGCTCTAAGTTCAAGCTGGAATAAGAAAAACATGAGAGGATTTCTTGGATGGTAAGATAGTCCTCATTGTTATCCCACTCTTGAATAAAGGTGGCTCTCCTGTGGTATCTTTGGGAGGAAGCATTTGAGTGAATCTTGGCAATAATCTTGTAGACCGTAATGCGAACACTATTGGGTTTAAGTTTCTTAGGAATTATGTCATTGCCCTCTTCTCAAATTAGGAAAAC

Network for GWHGAAEX018294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01909.22	NTP_transf_2	182	277	4.50E-10
PF03828.18	PAP_assoc	349	407	5.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03514	PAPD5_7, TRF4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0016779	Molecular Function	nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.630
SRP064423	SRR2545915	Juvenile tuber	36.950
SRP108465	SRR5643513	five period of Gastrodia elata	23.240
	SRR5643514	five period of Gastrodia elata	23.190
	SRR5643515	five period of Gastrodia elata	22.390
	SRR5643524	five period of Gastrodia elata	21.560
	SRR5643525	five period of Gastrodia elata	38.480
	SRR5643528	five period of Gastrodia elata	36.870
	SRR5643658	five period of Gastrodia elata	46.920
	SRR5643659	five period of Gastrodia elata	27.310
	SRR5643660	five period of Gastrodia elata	32.020
	SRR5643661	five period of Gastrodia elata	24.770
	SRR5643662	five period of Gastrodia elata	27.930
	SRR5643663	five period of Gastrodia elata	33.950
	SRR5643664	five period of Gastrodia elata	35.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.500
SRP279888	Gastro	Gastrodia elata tuber	30.37
	Juven	Juvenile tuber	59.83
	Mother_Gastro	Mother tuber of Gastrodia elata	29.05
	Mother_Juven	Mother tuber of Juvenile	34.06