Detail information of GWHGAAEX018296/evm.TU.scaffold_92.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297621333|ref|YP_003709470.1|3.00E-743-deoxy-manno-octulosonate cytidylyltransferase [Waddlia chondrophila WSU 86-1044]
nrgi|720083478|ref|XP_010242912.1|3.51E-168PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like [Nelumbo nucifera]
Swissprottr|Q9C920|KDSB_ARATH6.00E-1583-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial (Precursor)
trEMBLtr|A0A061F6F5|A0A061F6F5_THECC2.00E-164Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 {ECO:0000313|EMBL:EOY12950.1}
TAIRAT1G530001.00E-137Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009313091631335270+
Transcript Sequence

Network for GWHGAAEX018296

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02348.18CTP_transf_3562666.70E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00979kdsB Metabolic pathways map01100
Lipopolysaccharide biosynthesismap00540

Gene Ontology

GO term OntologyName
GO:0008690Molecular Function3-deoxy-manno-octulosonate cytidylyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms95.140
SRR2545915Juvenile tuber115.630
SRP108465SRR5643513five period of Gastrodia elata84.430
SRR5643514five period of Gastrodia elata80.800
SRR5643515five period of Gastrodia elata75.270
SRR5643524five period of Gastrodia elata80.920
SRR5643525five period of Gastrodia elata96.390
SRR5643528five period of Gastrodia elata91.610
SRR5643658five period of Gastrodia elata85.490
SRR5643659five period of Gastrodia elata90.900
SRR5643660five period of Gastrodia elata85.570
SRR5643661five period of Gastrodia elata90.110
SRR5643662five period of Gastrodia elata94.250
SRR5643663five period of Gastrodia elata95.920
SRR5643664five period of Gastrodia elata100.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_184.010
SRR6049655Rhizomagastrodiae_C368-T10_good_1101.960
SRR6049656Rhizomagastrodiae_C368-T07_good_183.130
SRR6049657Rhizomagastrodiae_C368-T07_good_169.500
SRR6049658Rhizomagastrodiae_C368-T04_good_172.340
SRR6049659Rhizomagastrodiae_C368-T04_good_169.150
SRR6049660Rhizomagastrodiae_C368-T01_good_167.440
SRR6049661Rhizomagastrodiae_C368-T04_good_170.250
SRR6049662Rhizomagastrodiae_C368-T01_good_188.120
SRR6049663Rhizomagastrodiae_C368-T01_good_180.290
SRR6049664Rhizomagastrodiae_C368-T10_good_1102.980
SRR6049665Rhizomagastrodiae_C368-T10_good_1102.980
SRP279888GastroGastrodia elata tuber 112.23
JuvenJuvenile tuber106.04
Mother_GastroMother tuber of Gastrodia elata 98.42
Mother_JuvenMother tuber of Juvenile 81.30