Detail information of GWHGAAEX018297/evm.TU.scaffold_92.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18976541|ref|NP_577898.1| | 3.00E-25 | nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM 3638] |
| KOG | KOG1122 | 0 | tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) |
| nr | gi|743756999|ref|XP_010919742.1| | 0 | PREDICTED: putative methyltransferase NSUN6 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|A0A061DKE4|A0A061DKE4_THECC | 0 | NOL1/NOP2/sun family protein isoform 2 {ECO:0000313|EMBL:EOX93130.1} |
| TAIR | AT1G06560 | 0 | NOL1/NOP2/sun family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 1337243 | 1413095 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018297
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01472.19 | PUA | 165 | 205 | 4.00E-06 |
| PF01189.16 | Methyltr_RsmB-F | 295 | 363 | 5.00E-16 |
| PF01189.16 | Methyltr_RsmB-F | 468 | 553 | 1.30E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.650 |
| SRR2545915 | Juvenile tuber | 23.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.840 |
| SRR5643514 | five period of Gastrodia elata | 10.770 | |
| SRR5643515 | five period of Gastrodia elata | 9.220 | |
| SRR5643524 | five period of Gastrodia elata | 10.500 | |
| SRR5643525 | five period of Gastrodia elata | 9.190 | |
| SRR5643528 | five period of Gastrodia elata | 9.240 | |
| SRR5643658 | five period of Gastrodia elata | 8.330 | |
| SRR5643659 | five period of Gastrodia elata | 13.560 | |
| SRR5643660 | five period of Gastrodia elata | 12.450 | |
| SRR5643661 | five period of Gastrodia elata | 11.760 | |
| SRR5643662 | five period of Gastrodia elata | 12.770 | |
| SRR5643663 | five period of Gastrodia elata | 13.690 | |
| SRR5643664 | five period of Gastrodia elata | 13.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.02 |
| Juven | Juvenile tuber | 14.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.14 | |
| Mother_Juven | Mother tuber of Juvenile | 9.47 |