Detail information of GWHGAAEX018299/evm.TU.scaffold_92.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|171061024|ref|YP_001793373.1| | 3.00E-32 | 2OG-Fe(II) oxygenase [Leptothrix cholodnii SP-6] |
| KOG | KOG0143 | 1.00E-111 | Iron/ascorbate family oxidoreductases |
| nr | gi|743757020|ref|XP_010919848.1| | 1.57E-132 | PREDICTED: gibberellin 2-beta-dioxygenase-like [Elaeis guineensis] |
| Swissprot | tr|Q9XG83|G2OX_PHACN | 6.00E-121 | Gibberellin 2-beta-dioxygenase |
| trEMBL | tr|M0SJF5|M0SJF5_MUSAM | 7.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P31410_001} |
| TAIR | AT1G30040 | 1.00E-111 | gibberellin 2-oxidase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 1515894 | 1520029 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018299
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 28 | 100 | 6.30E-14 |
| PF03171.19 | 2OG-FeII_Oxy | 180 | 279 | 2.00E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04125 | E1.14.11.13 | Biosynthesis of secondary metabolites | map01110 |
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.780 |
| SRR2545915 | Juvenile tuber | 58.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 128.600 |
| SRR5643514 | five period of Gastrodia elata | 12.430 | |
| SRR5643515 | five period of Gastrodia elata | 132.590 | |
| SRR5643524 | five period of Gastrodia elata | 72.180 | |
| SRR5643525 | five period of Gastrodia elata | 8.150 | |
| SRR5643528 | five period of Gastrodia elata | 33.150 | |
| SRR5643658 | five period of Gastrodia elata | 10.350 | |
| SRR5643659 | five period of Gastrodia elata | 19.240 | |
| SRR5643660 | five period of Gastrodia elata | 14.490 | |
| SRR5643661 | five period of Gastrodia elata | 35.960 | |
| SRR5643662 | five period of Gastrodia elata | 87.370 | |
| SRR5643663 | five period of Gastrodia elata | 16.630 | |
| SRR5643664 | five period of Gastrodia elata | 6.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 60.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 89.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.75 |
| Juven | Juvenile tuber | 10.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.44 | |
| Mother_Juven | Mother tuber of Juvenile | 229.29 |