Detail information of GWHGAAEX018304/evm.TU.scaffold_92.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325109481|ref|YP_004270549.1| | 1.00E-33 | pterin-4-alpha-carbinolamine dehydratase [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG4073 | 4.00E-62 | Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 |
| nr | gi|743794903|ref|XP_010924300.1| | 1.04E-65 | PREDICTED: uncharacterized protein LOC105047185 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|R0IPK0|R0IPK0_9BRAS | 6.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:EOA39088.1} |
| TAIR | AT1G29810 | 4.00E-62 | Transcriptional coactivator/pterin dehydratase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 1925863 | 1966834 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018304
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01329.18 | Pterin_4a | 98 | 191 | 3.10E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01724 | PCBD, phhB | Metabolic pathways | map01100 |
| Folate biosynthesis | map00790 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006729 | Biological Process | tetrahydrobiopterin biosynthetic process |
| GO:0008124 | Molecular Function | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.380 |
| SRR2545915 | Juvenile tuber | 43.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.760 |
| SRR5643514 | five period of Gastrodia elata | 27.100 | |
| SRR5643515 | five period of Gastrodia elata | 23.930 | |
| SRR5643524 | five period of Gastrodia elata | 26.920 | |
| SRR5643525 | five period of Gastrodia elata | 17.510 | |
| SRR5643528 | five period of Gastrodia elata | 16.220 | |
| SRR5643658 | five period of Gastrodia elata | 22.030 | |
| SRR5643659 | five period of Gastrodia elata | 27.080 | |
| SRR5643660 | five period of Gastrodia elata | 20.590 | |
| SRR5643661 | five period of Gastrodia elata | 27.270 | |
| SRR5643662 | five period of Gastrodia elata | 31.000 | |
| SRR5643663 | five period of Gastrodia elata | 30.400 | |
| SRR5643664 | five period of Gastrodia elata | 21.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.19 |
| Juven | Juvenile tuber | 19.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.24 | |
| Mother_Juven | Mother tuber of Juvenile | 12.97 |