Detail information of GWHGAAEX018308/evm.TU.scaffold_92.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743841978|ref|XP_010937677.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Elaeis guineensis] |
| Swissprot | tr|Q9FJE6|PP437_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g59900 |
| trEMBL | tr|W9SER3|W9SER3_9ROSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EXC51944.1} |
| TAIR | AT5G59900 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 2289479 | 2348030 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018308
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 183 | 206 | 0.14 |
| PF01535.19 | PPR | 214 | 244 | 0.0029 |
| PF13041.5 | PPR_2 | 251 | 296 | 3.10E-10 |
| PF01535.19 | PPR | 321 | 348 | 1 |
| PF13041.5 | PPR_2 | 352 | 401 | 1.30E-16 |
| PF12854.6 | PPR_1 | 420 | 450 | 3.70E-06 |
| PF13041.5 | PPR_2 | 458 | 507 | 4.80E-14 |
| PF13041.5 | PPR_2 | 528 | 577 | 1.90E-18 |
| PF13041.5 | PPR_2 | 599 | 647 | 1.60E-11 |
| PF13041.5 | PPR_2 | 668 | 716 | 2.80E-11 |
| PF13041.5 | PPR_2 | 772 | 815 | 2.40E-13 |
| PF13041.5 | PPR_2 | 841 | 887 | 6.80E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.130 |
| SRR2545915 | Juvenile tuber | 2.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.880 |
| SRR5643514 | five period of Gastrodia elata | 2.690 | |
| SRR5643515 | five period of Gastrodia elata | 1.780 | |
| SRR5643524 | five period of Gastrodia elata | 2.540 | |
| SRR5643525 | five period of Gastrodia elata | 1.790 | |
| SRR5643528 | five period of Gastrodia elata | 0.970 | |
| SRR5643658 | five period of Gastrodia elata | 1.500 | |
| SRR5643659 | five period of Gastrodia elata | 4.190 | |
| SRR5643660 | five period of Gastrodia elata | 4.320 | |
| SRR5643661 | five period of Gastrodia elata | 3.380 | |
| SRR5643662 | five period of Gastrodia elata | 2.610 | |
| SRR5643663 | five period of Gastrodia elata | 3.570 | |
| SRR5643664 | five period of Gastrodia elata | 3.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.25 |
| Juven | Juvenile tuber | 5.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.85 | |
| Mother_Juven | Mother tuber of Juvenile | 2.66 |