Detail information of GWHGAAEX018310/evm.TU.scaffold_92.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 7.00E-28 | GATA-4/5/6 transcription factors |
| nr | gi|672170662|ref|XP_008805393.1| | 1.24E-43 | PREDICTED: GATA transcription factor 19-like [Phoenix dactylifera] |
| Swissprot | tr|Q8LC79|GAT18_ARATH | 2.00E-28 | GATA transcription factor 18 |
| trEMBL | tr|M0TKP8|M0TKP8_MUSAM | 5.00E-37 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P25620_001} |
| TAIR | AT3G50870 | 7.00E-28 | GATA type zinc finger transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 2456071 | 2458653 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018310
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 121 | 155 | 5.00E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.050 |
| SRR2545915 | Juvenile tuber | 0.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.470 |
| SRR5643514 | five period of Gastrodia elata | 1.140 | |
| SRR5643515 | five period of Gastrodia elata | 0.390 | |
| SRR5643524 | five period of Gastrodia elata | 1.040 | |
| SRR5643525 | five period of Gastrodia elata | 1.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.790 | |
| SRR5643658 | five period of Gastrodia elata | 0.320 | |
| SRR5643659 | five period of Gastrodia elata | 0.860 | |
| SRR5643660 | five period of Gastrodia elata | 0.610 | |
| SRR5643661 | five period of Gastrodia elata | 0.430 | |
| SRR5643662 | five period of Gastrodia elata | 0.790 | |
| SRR5643663 | five period of Gastrodia elata | 1.390 | |
| SRR5643664 | five period of Gastrodia elata | 2.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.89 |
| Juven | Juvenile tuber | 0.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.25 | |
| Mother_Juven | Mother tuber of Juvenile | 1.18 |