Gene detail

Detail information of GWHGAAEX018313/evm.TU.scaffold_92.70

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672144056\|ref\|XP_008795920.1\|	1.52E-85	PREDICTED: uncharacterized protein LOC103711526 [Phoenix dactylifera]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	7.00E-17	Serine/threonine-protein kinase ATM
trEMBL	tr\|M0TY59\|M0TY59_MUSAM	5.00E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P07000_001}
TAIR	AT5G40340	5.00E-23	Tudor/PWWP/MBT superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	2509626	2520009	+

Transcript Sequence
>GWHTAAEX018313 AAAGTTCAGTCACAAAATATATAAAATAAACTGCATTTAAACACAGTACGAGGGTTTCGTCTTTCGATACAAGCAACTCAAAAAATAAACCAAAAAAAGAAAAAGAACTGCTTTTCTTGCACATTCATAGATGCGAGCTGATGGAGCAGATGGGGCGGGGCTATGAATTTCGAATTGGGGATTTTGTGTGGGGCAAGATCCATGGCCACTTGTGGTGGCCCGGGAAAATCTGCAGCCCGTCGGATGCATCTGAGCAAGCTACAAATTCAAAGCATCCTGATCACTATGTTCTAGTGGCTTACTTTGCCGATACCGCCTCTTCTTGGTGCGAGCCTTCCGAATTGAGACCATTTAAAGATGAATTTCAGCGGATAGTGGATCAAAATAGCTCCCATGGCTTTATTAGTGCTGTCAAGGATGCCATAAATGAGATTGAAAGGTATTTAAGGTCTGATATGACTTGTTATTGCGTGCCACCGGAAATAAATACTCAATTTAGGGTCGATCGGTATGATGGTATTGGCAAAGCTTCCATTGCTAATTACACTCCTTCCGCATTCCTTGCTCACCTTCAAGCTGTTGCCAGAGATATTTCTGTTTCCAGCGTGCTTGATGTTGCCATGTTGAGGAGTTGGGCTGCTTCATTCTATCTCAGGAACGGATGCTTCGTTAAAATGATTGAGGATTTATTTGATGAAAAACAGATAGAATTCGAAGCTTTACCTGAAAATTTTCAGAAGGACAAAGAGCTTGTTCAAGAGACTGGTGGTAGGCTAGTTAAACGGCCGCTTATTGCTGTGGATGAAGCCTCAAGAAAGAAGAGAAGTATGGCTGAACTCATCCTGTTGGCTGATACTGAGGTGCAGCACAGTTTGAAAGAGGATGACAAGCTTGGAACAGTTGACAATGAATTCAAAGGACATATAATTGAAGGCTTATTCTTAAACCAGAAAAAGAAGTGCCTGGTAAATGTAAAAGATAAGGCTTGTGGCACTAAGACATCTAGGGTTGTGCATAAAGAGGATAATGGCTTTACAAGACGGGAGCGAAAGATGAGCAAGTATTTATCACCTCCATACACCACTGGATATGTCGGACGATCAAATTTATTCAGACTGGTGGATTCTGATGTCTTGGAGAGTGATTCTGATGTTCCTCTGCATATGCACTCCAAATGTTCAACCTATGTTGGCAGCTCTCAGACTTCCACAAAAGAAGGCCATTCATTGATTCATTTATCAGAATATATTGAGATTTCTGCACATGTTATGTTAAAAGAGCTTCTCTTTGCCGCATGCAATCCACTTCATATGGGAAAGAACTTCCCGGCTGCAACAATGATGGAATTCCTTGTAAAGCATAGAAGCTTGGTGCACTCTGGTGTTTTAGAGTATGAAATTCAACCTGAGAAGAAAGATAGGCATTGTGACATTCTTAGGGATAATTTACTGAATGAAATGGAATCCAGTGATGTTTCACTTAGGAAAAAGAGAAATGAACGGAATGATGATGATTGTAATCGAGAAAATTTGCTGGGAACACAGCAGAGTAGAAGAAAATTGAAGAAAGATCAAGCTACAACAGAAACTACAAATGATTATTATTGTCGAAATGGAGTGGATGCCTCAACTGGTAGATCAAGGAATCGAGGGAAGACAGCTGCTGTTGAAATCCACAGTGGAACTGTGGAAAAATCAGGCTATAGAACCTTCAATAATTTAGAGGAAGTTAAACTAGAAGAGAAGAAAAATAAAAGTACTGGTATGATTTTGGATAGCAAAATAAGGAATGCAGAAAAAGATAATCTCATAAGTTCTGCCCTCAAGAGAAAAAGCAATGTTGATTTTACAAACGGCGAGCACAAGACCGATTTTGATCACATAATGTATGGCAACTCAGAAAAAAGCCTTTTGAAGGCAAAGACTAAACATGCTGATGAAAATAATGAAAATTCAGCAGCTCTTCTTTTGACCTTTTCTTCTGGAAGCACCCTTCCTTCAAAAGAAGAGCTCATGGCGGCATTTGTCAAATACGGGGCCTTGATAAAGCAGGAGACTGAGCTGTTTAGAGATACTGGATGCGCTCGGGTTGTTTTTGCGAGGGCAAAGGATGCAAAGAAAGCTCTAAATGCTGTAAGATCTAGAAAGCATTTCCCCTTTGTAGTTGTTGATTGCCAATCATTCCATTTACCTCAATGCTCCGACATTCCCTCACCTTCTCCGTCCAATCAGAACACTTCACTGTTATACATAAGCCGTGACCTTCAAAGGTTGATAAATAAAATTTCACCTAAGAATGGTCCTACTTGTGCTGATATGAAGCCGGAGGTGAGGACCGATTTAATAAATGACATCAGTGGCCTTCTAAGCAAGTTCAAATTCCAGCAACAGATGAAGTATTCGAAGAACTAGTTTTTTCCAAGGAGCTGTAGAAGATGCCTGCAAGGTTACTGTCATCCTCTTGCAAGGGAAGATTGTTATGTTGTGGACACCATTTAGTTCATCATGGAGATGCTAATAGACTTCCGGTGAACTTCCGGGAGGTTTCGAGGCTACTCGGAACAAAGCTAGAAAGTCCAGCAGCAGCACAGGCGCTGCAATGCACCTGACACCCTGCACCCGAGAAGGAGGCGCCATAGCGCGCCTCAGCGGCAGCGTCTCGAGAGTAGCGCGCCACAGTGAAGTAGCGCACGCCAGCGCCAGGCAAACAGAGAACAGGGAGCTGCAGTGCGCTCTGGCACCTGACTACCCGAAGCCTGGGCCGTAGCGCCTGGCAGATTCCAGCTCTGATTAAGGTTGAACCCTAAGCTATTTGAAGAGTATTTTGGATCATTTGGGGTCCAAAATGGAGCTGAGTACTTAAGGAAATATGTTAGAGATAGTTCTAATTGTTTGTATTTCAGTTTTACATAGTAAAAATTTATGTGTGGTGTGGCATCATGATTTTTCCATTCTTAGGTTTTCC

Network for GWHGAAEX018313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.16	PWWP	10	102	2.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.160
SRP064423	SRR2545915	Juvenile tuber	54.660
SRP108465	SRR5643513	five period of Gastrodia elata	36.340
	SRR5643514	five period of Gastrodia elata	39.430
	SRR5643515	five period of Gastrodia elata	35.510
	SRR5643524	five period of Gastrodia elata	39.200
	SRR5643525	five period of Gastrodia elata	34.530
	SRR5643528	five period of Gastrodia elata	29.570
	SRR5643658	five period of Gastrodia elata	39.840
	SRR5643659	five period of Gastrodia elata	32.330
	SRR5643660	five period of Gastrodia elata	29.430
	SRR5643661	five period of Gastrodia elata	27.810
	SRR5643662	five period of Gastrodia elata	24.550
	SRR5643663	five period of Gastrodia elata	29.460
	SRR5643664	five period of Gastrodia elata	25.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.070
SRP279888	Gastro	Gastrodia elata tuber	36.18
	Juven	Juvenile tuber	34.89
	Mother_Gastro	Mother tuber of Gastrodia elata	37.79
	Mother_Juven	Mother tuber of Juvenile	27.67