Gene detail

Detail information of GWHGAAEX018326/evm.TU.scaffold_92.87

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0724	3.00E-46	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
nr	gi\|695076702\|ref\|XP_009385654.1\|	6.50E-74	PREDICTED: protein REVEILLE 1-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4KGY6\|RVE1_ARATH	7.00E-47	Protein REVEILLE 1
trEMBL	tr\|M0RNH2\|M0RNH2_MUSAM	2.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01420_001}
TAIR	AT5G17300	3.00E-46	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	3077796	3080367	+

Transcript Sequence
>GWHTAAEX018326 CACTGGCCCACCGCTTACGTGGCACACCCCTCCTCCTTTTTCCCCCTCTCGCATTTCTCGGTGTCCGTCTCCTGAGATCCCTCTTCCCAATCCTTCGGTTCTCCTTCTCCATCTCTCTCTCCTTCTTCTGAGATTTGGCTTGGATCTCTGGGATTTGGTTCGAGGCGCCATTGTTCGGCGGCGGAGAGCTTTGCGAGGGTTCGTCGAGCTTTAGGGCTTGGCGAGATGAACTGAAAGCGTTGAAGCGATCGTTGTGATTCCATGGCTGAAACGGGCAAAAGTGGGTGCACAGGTTTGAATGCTTGGAATGGACTTTTGACAAATGAGCTAGATTCGTATGGAGATAAAGCTTCATTGGCACCAAAGGTGAGAAAACCTTATACCATAACTAAGCAGCGTGAAAGATGGACTGAAGAAGAGCACAAGAGGTTTCTTGAAGCTCTGCAGCTCCATGGCAGAGCTTGGCGTCGCATCGAAGAGCATATTGGAACCAAAACAGCAGTGCAAATTCGAAGCCATGCCCAGAAATTTTTCTCTAAGGTATCTCGAGATGCAGATGATAATGGAAATGCTGAATCAAAGCCGATCGAAATTCCTCCTCCTCGGCCAAAAAAGAAACCGAATCATCCTTACCCCCGGAAGCAGGTTTTTCTCTCCACAAAGAAGATCACTGTTCTCGGAAAGTTGAATAGATCTTCATCTCCTTTATTGTCAATCTCGGAACAAGGAAACGGTTCACCAACATCAGTTCTATCTCTAGTTGGATCGGAGTCAATAAATCCATTTTTTTCAAATAATAAGAATGGTTCTTCATCGCCGGCGGGATACGCTTCAGGATCAAATGATCACGATTCGCCAACTAACTCCTTTGAAGGGGACGATAAACATCTGTTGCTATACTTAACACCGGCTGGGTTAAGCATTGGAGATGAACACACGATGGATTCGGATATCTGTTCGAAGGAAGCTTCATCAGGAGAAGCGATAGCACCAAGCCTAAAACTCTTTGGGAGAACAGTGGTGGTTGATTGTGCGACGTCCAGAGCGGCAATGGTACCCGACCTGGAATCGGATTCAGGAAAGCAAGCCGAGGAGATGATCGACACCAACTTTCCCGTGATGAACGGCAGCGCGTGGCCGGGCGGCCTGCTTGCGGCATTCTATTGCTGGCCTCGGTTTTATGGCGAGGAGGGAAACTCTGCTGGAGTTTACCCTCCAACGTGGTGGCCCTTCTACGGGAATTCTCCGTTTCCTTGCGCCGCCAATGCACAGCAAAAGTGGGGCTCGGGAGAAAGCCTGCTTCGGCCGAATCTGCAGAACGAGTGCTCCGGCGCGGGCTCAAGCAGCGGGGAAGAGAATGGAGCCAGCGGCTGCTGCTTCGCGGCGCGAAATGCAGCAAAAATAGACAGTAGAAGAGCAGCAGCTGATGGAGGCAGGGGATTTGTACCATATAGAAGGTGTGTTTTTGAGGAGAAAGCAGAGAGAAGGCCGCCTTACGCTGCAAACTCTGTGGGTGACTGCCAAGGGGTGAAGCTGTGCTTGCAAGGCCTCCCTCTCTCTCTCACTCTTCCTCACTAACTTGTTCAAAAATGGGAGGGATTTTGGGATAATTGTCATTTTTTTTTTCAATTTTATTGCAGTGGCTGATGATTATTGTAGTTTTTTTCTTATATTTTTTAATAAATTTCACACAAATTTTTAAATAATATATAATTTTCATCACCCAAATTTAATCATTT

Network for GWHGAAEX018326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	46	89	3.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.920
SRP064423	SRR2545915	Juvenile tuber	132.260
SRP108465	SRR5643513	five period of Gastrodia elata	4.760
	SRR5643514	five period of Gastrodia elata	14.230
	SRR5643515	five period of Gastrodia elata	4.520
	SRR5643524	five period of Gastrodia elata	9.460
	SRR5643525	five period of Gastrodia elata	12.710
	SRR5643528	five period of Gastrodia elata	7.920
	SRR5643658	five period of Gastrodia elata	2.810
	SRR5643659	five period of Gastrodia elata	5.930
	SRR5643660	five period of Gastrodia elata	5.800
	SRR5643661	five period of Gastrodia elata	4.860
	SRR5643662	five period of Gastrodia elata	5.210
	SRR5643663	five period of Gastrodia elata	7.400
	SRR5643664	five period of Gastrodia elata	8.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.640
SRP279888	Gastro	Gastrodia elata tuber	17.48
	Juven	Juvenile tuber	29.56
	Mother_Gastro	Mother tuber of Gastrodia elata	44.20
	Mother_Juven	Mother tuber of Juvenile	32.97