Detail information of GWHGAAEX018329/evm.TU.scaffold_92.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3106 | 2.00E-173 | ER lumen protein retaining receptor |
| nr | gi|695077667|ref|XP_009386186.1| | 0 | PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P35402|ERD2A_ARATH | 4.00E-28 | ER lumen protein-retaining receptor A |
| trEMBL | tr|M0U754|M0U754_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07430_001} |
| TAIR | AT1G75760 | 2.00E-173 | ER lumen protein retaining receptor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 3140082 | 3198550 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018329
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00810.17 | ER_lumen_recept | 72 | 214 | 6.80E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006621 | Biological Process | protein retention in ER lumen |
| GO:0046923 | Molecular Function | ER retention sequence binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.500 |
| SRR2545915 | Juvenile tuber | 39.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.140 |
| SRR5643514 | five period of Gastrodia elata | 46.250 | |
| SRR5643515 | five period of Gastrodia elata | 42.700 | |
| SRR5643524 | five period of Gastrodia elata | 48.170 | |
| SRR5643525 | five period of Gastrodia elata | 58.050 | |
| SRR5643528 | five period of Gastrodia elata | 67.610 | |
| SRR5643658 | five period of Gastrodia elata | 59.960 | |
| SRR5643659 | five period of Gastrodia elata | 37.170 | |
| SRR5643660 | five period of Gastrodia elata | 33.320 | |
| SRR5643661 | five period of Gastrodia elata | 38.180 | |
| SRR5643662 | five period of Gastrodia elata | 40.160 | |
| SRR5643663 | five period of Gastrodia elata | 39.380 | |
| SRR5643664 | five period of Gastrodia elata | 35.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.93 |
| Juven | Juvenile tuber | 26.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.32 | |
| Mother_Juven | Mother tuber of Juvenile | 26.66 |