Detail information of GWHGAAEX018339/evm.TU.scaffold_92.101


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|261417365|ref|YP_003251048.1|6.00E-90dihydrodipicolinate reductase [Fibrobacter succinogenes subsp. succinogenes S85]
nrgi|672176635|ref|XP_008808387.1|1.66E-168PREDICTED: probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Phoenix dactylifera]
Swissprottr|Q10P67|DAPB2_ORYSJ5.00E-158Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (Precursor)
trEMBLtr|M0RWG3|M0RWG3_MUSAM2.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P02550_001}
TAIRAT2G440403.00E-132Dihydrodipicolinate reductase, bacterial/plant

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009335347363551538-
Transcript Sequence

Network for GWHGAAEX018339

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01113.19DapB_N601831.10E-14
PF05173.13DapB_C1873271.20E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00215dapB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Lysine biosynthesismap00300
Monobactam biosynthesismap00261

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0009089Biological Processlysine biosynthetic process via diaminopimelate
GO:0070402Molecular FunctionNADPH binding
GO:0008839Molecular Function4-hydroxy-tetrahydrodipicolinate reductase

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.640
SRR2545915Juvenile tuber26.480
SRP108465SRR5643513five period of Gastrodia elata17.250
SRR5643514five period of Gastrodia elata15.610
SRR5643515five period of Gastrodia elata14.490
SRR5643524five period of Gastrodia elata15.970
SRR5643525five period of Gastrodia elata13.390
SRR5643528five period of Gastrodia elata13.690
SRR5643658five period of Gastrodia elata12.090
SRR5643659five period of Gastrodia elata21.210
SRR5643660five period of Gastrodia elata20.030
SRR5643661five period of Gastrodia elata21.990
SRR5643662five period of Gastrodia elata26.510
SRR5643663five period of Gastrodia elata23.650
SRR5643664five period of Gastrodia elata23.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.430
SRR6049655Rhizomagastrodiae_C368-T10_good_110.710
SRR6049656Rhizomagastrodiae_C368-T07_good_122.310
SRR6049657Rhizomagastrodiae_C368-T07_good_118.920
SRR6049658Rhizomagastrodiae_C368-T04_good_120.730
SRR6049659Rhizomagastrodiae_C368-T04_good_115.770
SRR6049660Rhizomagastrodiae_C368-T01_good_118.700
SRR6049661Rhizomagastrodiae_C368-T04_good_118.860
SRR6049662Rhizomagastrodiae_C368-T01_good_122.850
SRR6049663Rhizomagastrodiae_C368-T01_good_118.890
SRR6049664Rhizomagastrodiae_C368-T10_good_123.070
SRR6049665Rhizomagastrodiae_C368-T10_good_123.070
SRP279888GastroGastrodia elata tuber 43.11
JuvenJuvenile tuber25.02
Mother_GastroMother tuber of Gastrodia elata 23.97
Mother_JuvenMother tuber of Juvenile 21.81