Detail information of GWHGAAEX018340/evm.TU.scaffold_92.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-170 | FOG: PPR repeat |
| nr | gi|672129892|ref|XP_008788464.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Phoenix dactylifera] |
| Swissprot | tr|Q9SKQ4|PP167_ARATH | 2.00E-170 | Pentatricopeptide repeat-containing protein At2g21090 |
| trEMBL | tr|A0A061DYH8|A0A061DYH8_THECC | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein {ECO:0000313|EMBL:EOX97730.1} |
| TAIR | AT2G21090 | 6.00E-170 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 3581447 | 3583956 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018340
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 115 | 144 | 7.10E-06 |
| PF13041.5 | PPR_2 | 148 | 196 | 1.40E-07 |
| PF01535.19 | PPR | 222 | 248 | 0.036 |
| PF01535.19 | PPR | 252 | 280 | 1.30E-06 |
| PF01535.19 | PPR | 282 | 309 | 2.30E-06 |
| PF01535.19 | PPR | 354 | 376 | 0.1 |
| PF13041.5 | PPR_2 | 384 | 431 | 1.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.090 |
| SRR2545915 | Juvenile tuber | 3.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.670 |
| SRR5643514 | five period of Gastrodia elata | 8.400 | |
| SRR5643515 | five period of Gastrodia elata | 7.150 | |
| SRR5643524 | five period of Gastrodia elata | 7.690 | |
| SRR5643525 | five period of Gastrodia elata | 4.360 | |
| SRR5643528 | five period of Gastrodia elata | 2.350 | |
| SRR5643658 | five period of Gastrodia elata | 2.850 | |
| SRR5643659 | five period of Gastrodia elata | 9.570 | |
| SRR5643660 | five period of Gastrodia elata | 9.510 | |
| SRR5643661 | five period of Gastrodia elata | 9.990 | |
| SRR5643662 | five period of Gastrodia elata | 8.330 | |
| SRR5643663 | five period of Gastrodia elata | 8.720 | |
| SRR5643664 | five period of Gastrodia elata | 7.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.17 |
| Juven | Juvenile tuber | 12.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.85 | |
| Mother_Juven | Mother tuber of Juvenile | 5.58 |