Detail information of GWHGAAEX018343/evm.TU.scaffold_92.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284990776|ref|YP_003409330.1| | 4.00E-15 | cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] |
| KOG | KOG3070 | 4.00E-34 | Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing |
| nr | gi|695000668|ref|XP_009412923.1| | 8.35E-47 | PREDICTED: glycine-rich protein 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O65639|CSP1_ARATH | 1.00E-34 | Cold shock protein 1 |
| trEMBL | tr|F2DJM5|F2DJM5_HORVD | 9.00E-46 | Predicted protein {ECO:0000313|EMBL:BAJ95296.1} |
| TAIR | AT4G36020 | 4.00E-34 | cold shock domain protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 3676510 | 3678405 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018343
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00313.21 | CSD | 9 | 73 | 1.00E-27 |
| PF00098.22 | zf-CCHC | 178 | 192 | 2.80E-07 |
| PF00098.22 | zf-CCHC | 225 | 240 | 8.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 202.940 |
| SRR2545915 | Juvenile tuber | 170.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 379.450 |
| SRR5643514 | five period of Gastrodia elata | 342.130 | |
| SRR5643515 | five period of Gastrodia elata | 351.660 | |
| SRR5643524 | five period of Gastrodia elata | 374.830 | |
| SRR5643525 | five period of Gastrodia elata | 607.360 | |
| SRR5643528 | five period of Gastrodia elata | 502.090 | |
| SRR5643658 | five period of Gastrodia elata | 547.810 | |
| SRR5643659 | five period of Gastrodia elata | 497.190 | |
| SRR5643660 | five period of Gastrodia elata | 540.490 | |
| SRR5643661 | five period of Gastrodia elata | 578.130 | |
| SRR5643662 | five period of Gastrodia elata | 536.060 | |
| SRR5643663 | five period of Gastrodia elata | 457.060 | |
| SRR5643664 | five period of Gastrodia elata | 568.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 191.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 123.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 230.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 229.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 244.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 243.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 243.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 231.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 234.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 258.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 234.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 234.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 564.80 |
| Juven | Juvenile tuber | 387.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 245.35 | |
| Mother_Juven | Mother tuber of Juvenile | 261.03 |