Gene detail

Detail information of GWHGAAEX018344/evm.TU.scaffold_92.108

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1303	Amino acid transporters
nr	gi\|672115721\|ref\|XP_008781006.1\|	PREDICTED: auxin transporter-like protein 2 [Phoenix dactylifera]
Swissprot	tr\|Q8L883\|LAX5_MEDTR	Auxin transporter-like protein 5
trEMBL	tr\|M0SXM0\|M0SXM0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P11410_001}
TAIR	AT2G21050	like AUXIN RESISTANT 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000093	3742880	3748425	+

Transcript Sequence
>GWHTAAEX018344 ATGTGCACAATCTCACACAGCACCGATGACAAGACAGTGGAAACGGTAATGGCCGGAAGATACATAGAAATGGAGCACGAAGGAGAGAAAAAGACGGCCAAATCTCGCTTCTCCTCTCTTCTCTGGCACGGCGGCTCTGCCTACGACGCCTGGTTCAGCTGCGCCTCCAACCAAGTTGCTCAAGTTCTCCTCACTCTCCCCTACTCCTTTTCCCAACTGGGCATGCTCAGCGGCATCCTGTTCCAGCTTCTTTACGGCCTCATGGGAAGCTGGACCGCTTACCTTATAAGCATACTTTACATAGAGTACAGAACCAGGAAGGAGAGGGAGAAGGTCGATTTCAGGAACCATGTCATTCAGTGGTTTGAGGTTCTCGAAGGCTTGCTGGGAAAGCGTTGGAGAAATGTGGGGCTGGTTTTCAACTGCACGTTCCTGCTCTTCGGCTCTGTTATACAGCTGATTGCTTGCGCCAGCAATATATACTACATAAATGACAGATTGGATAAGAGGACATGGACTTATATATTTGGGGCGTGCTGCGCTACGACAGTGTTCATCCCCTCTTTCAGAAACTACAGGGTGTGGTCGTTTCTTGGTCTCCTGATGACCACTTACACGGCTTGGTATCTTGCTGTTGCTGCTCTGCTTCATGGCCAGGTGGAAGGGGTTAAGCATTCGGGGCCAAAGAACATGGTCCTCTACTTCACTGGCGCTACCAACATTCTCTACACCTTTGGCGGCCACGCTGTTACTGTGGAGATAATGCACGCGATGTGGAAGCCGCAGAAGTTCAAGGGCATCTACCTGTTGGCGACGGGGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCGTGCGTGTACTGGGCCTTCGGGGACAATCTGCTAAACCGGTCCAACGCGCTGTCGCTGCTGCCGCGAACCCGGTTCAGGGATGCGGCGGTGGCGCTGATGCTGGTCCACCAGTTCATCACATTCGGCTTCGCGTGCACCCCGCTGTACTTCGTGTGGGAGAAAGCGGTGGGGCTGCACGACTGCCGGAGCCTCTGCAAGAGGGCCGCCGCCCGCCTCCCCGTCGTCATCCCCATTTGGTTTTTGGCCATCATTTTCCCTTTTTTCGGACCCATCAACTCAGCCGTCGGATCTCTGCTCGTCAGCTTCACCGTTTATGTTATACCGGCTTTGGCGCATATGCTCATCTTCCGGTCACCCCACGCTCGCCAGAATGCGGTTGAGCCGCCGCCTAGATACCTCGGAAAATGGATCGGCGCTTACACGATCAACGTGATAATAGTCGGGTGGGTTCTCGTCGTCGGGTTCGGGTTCGGCGGATGGGCTAGCATGACCAATTTCGTGCACCAAATCAAAACGTTCGGCCTCTTCACCAAATGCTACCAATGCCCGCCGCCTTCTCTTCTGCTTCCGCAGAATGCGCCGGCCGCCGCCCCATTGCCGCTCCCTCACAACTTTTATCCGCCCAACTCGACTAGATCTATATCTCTTCACTCTCCTTCTCTTTCTCCCTCTTATTAACTTGCCTATTCAATTTAACAGCTATCGCATTCACCATGGTCATCGATCAAGAGTCTATGTTGATCATGATGATGATGGGAGAAGTTTGTTGTCCTTTGATTTTATCATAGAATTTCATCCCCGAGAAAGAGCATGAACCTCTTATAATAAAAGGTTAGATTTTTGTTTTTTTTTTTGTTGCGGTATCTGAGTTAGAGAATTGAATGCTGAGAAGATGACAAACAGCAGCAGTTGATGAGAGTGTGCTTCACTGCTTTGCTTTGACTTGACATTTCCTTGTTTTATTATTGCATTTCAGTATTTTTT

Network for GWHGAAEX018344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	43	416	1.40E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13946	AUX1, LAX	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.840
SRP064423	SRR2545915	Juvenile tuber	1.090
SRP108465	SRR5643513	five period of Gastrodia elata	3.080
	SRR5643514	five period of Gastrodia elata	4.240
	SRR5643515	five period of Gastrodia elata	2.830
	SRR5643524	five period of Gastrodia elata	3.890
	SRR5643525	five period of Gastrodia elata	1.500
	SRR5643528	five period of Gastrodia elata	0.570
	SRR5643658	five period of Gastrodia elata	0.760
	SRR5643659	five period of Gastrodia elata	1.350
	SRR5643660	five period of Gastrodia elata	0.660
	SRR5643661	five period of Gastrodia elata	0.350
	SRR5643662	five period of Gastrodia elata	0.580
	SRR5643663	five period of Gastrodia elata	0.860
	SRR5643664	five period of Gastrodia elata	0.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.550
SRP279888	Gastro	Gastrodia elata tuber	2.51
	Juven	Juvenile tuber	1.47
	Mother_Gastro	Mother tuber of Gastrodia elata	0.45
	Mother_Juven	Mother tuber of Juvenile	0.43