Detail information of GWHGAAEX018347/evm.TU.scaffold_92.111


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|166366485|ref|YP_001658758.1|4.00E-19WD repeat-containing protein [Microcystis aeruginosa NIES-843]
KOGKOG02823.00E-134mRNA splicing factor
nrgi|743779387|ref|XP_010920159.1|2.14E-167PREDICTED: WD repeat-containing protein 25 [Elaeis guineensis]
Swissprottr|Q6NLV4|FY_ARATH6.00E-11Flowering time control protein FY
trEMBLtr|K7N3E5|K7N3E5_SOYBN2.00E-150Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G27821.1}
TAIRAT5G545203.00E-134Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009337953423834274+
Transcript Sequence

Network for GWHGAAEX018347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD401301652.00E-05
PF00400.31WD401742080.0054
PF00400.31WD402262520.17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.510
SRR2545915Juvenile tuber13.130
SRP108465SRR5643513five period of Gastrodia elata18.610
SRR5643514five period of Gastrodia elata19.860
SRR5643515five period of Gastrodia elata17.140
SRR5643524five period of Gastrodia elata20.860
SRR5643525five period of Gastrodia elata21.900
SRR5643528five period of Gastrodia elata19.520
SRR5643658five period of Gastrodia elata24.500
SRR5643659five period of Gastrodia elata18.320
SRR5643660five period of Gastrodia elata19.400
SRR5643661five period of Gastrodia elata22.060
SRR5643662five period of Gastrodia elata21.170
SRR5643663five period of Gastrodia elata19.520
SRR5643664five period of Gastrodia elata20.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.570
SRR6049655Rhizomagastrodiae_C368-T10_good_113.380
SRR6049656Rhizomagastrodiae_C368-T07_good_116.850
SRR6049657Rhizomagastrodiae_C368-T07_good_110.490
SRR6049658Rhizomagastrodiae_C368-T04_good_110.110
SRR6049659Rhizomagastrodiae_C368-T04_good_112.250
SRR6049660Rhizomagastrodiae_C368-T01_good_114.140
SRR6049661Rhizomagastrodiae_C368-T04_good_110.790
SRR6049662Rhizomagastrodiae_C368-T01_good_117.210
SRR6049663Rhizomagastrodiae_C368-T01_good_113.390
SRR6049664Rhizomagastrodiae_C368-T10_good_116.390
SRR6049665Rhizomagastrodiae_C368-T10_good_116.390
SRP279888GastroGastrodia elata tuber 14.91
JuvenJuvenile tuber17.56
Mother_GastroMother tuber of Gastrodia elata 8.22
Mother_JuvenMother tuber of Juvenile 9.94