Detail information of GWHGAAEX018351/evm.TU.scaffold_92.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1735 | 3.00E-69 | Actin depolymerizing factor |
| nr | gi|743826552|ref|XP_010933328.1| | 2.82E-77 | PREDICTED: actin-depolymerizing factor 5 [Elaeis guineensis] |
| Swissprot | tr|Q10P87|ADF5_ORYSJ | 3.00E-73 | Actin-depolymerizing factor 5 |
| trEMBL | tr|A0A0A0LLM1|A0A0A0LLM1_CUCSA | 1.00E-74 | Uncharacterized protein {ECO:0000313|EMBL:KGN61924.1} |
| TAIR | AT2G16700 | 3.00E-69 | actin depolymerizing factor 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 3859497 | 3861623 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018351
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00241.19 | Cofilin_ADF | 9 | 129 | 8.60E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05765 | CFL | Regulation of actin cytoskeleton | map04810 |
| Fc gamma R-mediated phagocytosis | map04666 | ||
| Axon guidance | map04360 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030042 | Biological Process | actin filament depolymerization |
| GO:0003779 | Molecular Function | actin binding |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.490 |
| SRR2545915 | Juvenile tuber | 43.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 64.260 |
| SRR5643514 | five period of Gastrodia elata | 111.790 | |
| SRR5643515 | five period of Gastrodia elata | 62.110 | |
| SRR5643524 | five period of Gastrodia elata | 55.870 | |
| SRR5643525 | five period of Gastrodia elata | 75.880 | |
| SRR5643528 | five period of Gastrodia elata | 124.340 | |
| SRR5643658 | five period of Gastrodia elata | 101.510 | |
| SRR5643659 | five period of Gastrodia elata | 22.070 | |
| SRR5643660 | five period of Gastrodia elata | 21.170 | |
| SRR5643661 | five period of Gastrodia elata | 23.670 | |
| SRR5643662 | five period of Gastrodia elata | 31.000 | |
| SRR5643663 | five period of Gastrodia elata | 135.000 | |
| SRR5643664 | five period of Gastrodia elata | 37.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.61 |
| Juven | Juvenile tuber | 2.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 2.26 |