Detail information of GWHGAAEX018354/evm.TU.scaffold_92.118
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209965598|ref|YP_002298513.1| | 3.00E-41 | 50S ribosomal protein L20 [Rhodospirillum centenum SW] |
| KOG | KOG4707 | 1.00E-67 | Mitochondrial/chloroplast ribosomal protein L20 |
| nr | gi|672162754|ref|XP_008801202.1| | 1.38E-76 | PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|P56352|RK20_CHLVU | 5.00E-29 | 50S ribosomal protein L20, chloroplastic |
| trEMBL | tr|I1HR94|I1HR94_BRADI | 2.00E-76 | 50S ribosomal protein L20 {ECO:0000256|RuleBase:RU004311} |
| TAIR | AT1G16740 | 1.00E-67 | Ribosomal protein L20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 3998756 | 4013505 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018354
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00453.17 | Ribosomal_L20 | 3 | 98 | 1.80E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02887 | RP-L20, MRPL20, rplT | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0019843 | Molecular Function | rRNA binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.020 |
| SRR2545915 | Juvenile tuber | 31.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.580 |
| SRR5643514 | five period of Gastrodia elata | 39.720 | |
| SRR5643515 | five period of Gastrodia elata | 41.230 | |
| SRR5643524 | five period of Gastrodia elata | 39.410 | |
| SRR5643525 | five period of Gastrodia elata | 72.270 | |
| SRR5643528 | five period of Gastrodia elata | 60.990 | |
| SRR5643658 | five period of Gastrodia elata | 58.610 | |
| SRR5643659 | five period of Gastrodia elata | 53.750 | |
| SRR5643660 | five period of Gastrodia elata | 50.380 | |
| SRR5643661 | five period of Gastrodia elata | 54.990 | |
| SRR5643662 | five period of Gastrodia elata | 57.720 | |
| SRR5643663 | five period of Gastrodia elata | 51.710 | |
| SRR5643664 | five period of Gastrodia elata | 53.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.22 |
| Juven | Juvenile tuber | 26.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.96 | |
| Mother_Juven | Mother tuber of Juvenile | 18.46 |