Detail information of GWHGAAEX018357/evm.TU.scaffold_92.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1716 | 2.00E-102 | Dual specificity phosphatase |
| nr | gi|743776383|ref|XP_010918598.1| | 4.83E-171 | PREDICTED: phosphoglucan phosphatase DSP4, amyloplastic isoform X1 [Elaeis guineensis] |
| Swissprot | tr|G4LTX4|DSP4_CASSA | 1.00E-158 | Phosphoglucan phosphatase DSP4, amyloplastic {ECO:0000250|UniProtKB:Q9FEB5} (Precursor) |
| trEMBL | tr|M5XRE9|M5XRE9_PRUPE | 8.00E-161 | Uncharacterized protein {ECO:0000313|EMBL:EMJ21600.1} |
| TAIR | AT3G52180_1 | 2.00E-102 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000093 | 4100911 | 4154605 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018357
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 139 | 234 | 9.00E-13 |
| PF16561.4 | AMPK1_CBM | 257 | 338 | 5.40E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM48 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 96.450 |
| SRR2545915 | Juvenile tuber | 52.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.230 |
| SRR5643514 | five period of Gastrodia elata | 81.550 | |
| SRR5643515 | five period of Gastrodia elata | 99.500 | |
| SRR5643524 | five period of Gastrodia elata | 111.470 | |
| SRR5643525 | five period of Gastrodia elata | 291.770 | |
| SRR5643528 | five period of Gastrodia elata | 469.790 | |
| SRR5643658 | five period of Gastrodia elata | 349.700 | |
| SRR5643659 | five period of Gastrodia elata | 20.500 | |
| SRR5643660 | five period of Gastrodia elata | 24.290 | |
| SRR5643661 | five period of Gastrodia elata | 24.950 | |
| SRR5643662 | five period of Gastrodia elata | 54.940 | |
| SRR5643663 | five period of Gastrodia elata | 22.260 | |
| SRR5643664 | five period of Gastrodia elata | 38.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 88.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 161.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 201.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 128.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 64.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 78.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 68.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 68.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 118.43 |
| Juven | Juvenile tuber | 36.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 491.60 | |
| Mother_Juven | Mother tuber of Juvenile | 457.81 |